PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_14799 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | Dof | ||||||||
Protein Properties | Length: 206aa MW: 22168.7 Da PI: 9.7081 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 127.2 | 4.7e-40 | 6 | 67 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ke+al+cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss PEQU_14799 6 KEQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 67 6899******************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 8.0E-30 | 2 | 64 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.3E-34 | 8 | 64 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.264 | 10 | 64 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 12 | 48 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
RVRPHKEQAL NCPRCNSTNT KFCYYNNYSL SQPRYFCKTC RRYWTEGGSL RNVPVGGGSR 60 KNKRSSSSSS NSVPTPTFTS SSTPKTTLPS SSSTNLQPSH QHMIHGVETS KFCQGGGHDL 120 NLSFASAHDS VSALELLRSG ISARGMGTFV PGSVFGAGFG FQELMRPVSD GMKLHPLDGV 180 GGTSGYGGSM QGEGDGRLLF PFEDLK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020581985.1 | 1e-151 | dof zinc finger protein DOF1.8-like, partial | ||||
Swissprot | Q43385 | 3e-44 | DOF37_ARATH; Dof zinc finger protein DOF3.7 | ||||
TrEMBL | A0A2I0X643 | 8e-76 | A0A2I0X643_9ASPA; Dof zinc finger protein DOF3.7 | ||||
STRING | GSMUA_Achr4P27160_001 | 4e-60 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2369 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61850.3 | 6e-40 | Dof family protein |