PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_14366

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

WRKY

Protein Properties

Length: 132aa MW: 15377.2 Da PI: 9.679

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_14366	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99	3e-31	27	85	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDg++WrKYG+K vk+s++pr+YYrC+s+gC vkk+ver+++dp++v+++Yeg+Hnh+ PEQU_14366 27 MDDGFKWRKYGKKAVKSSPNPRNYYRCSSSGCGVKKRVERDRNDPSYVITIYEGTHNHK 85 69********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.2E-33	14	87	IPR003657	WRKY domain
SuperFamily	SSF118290	2.75E-28	19	87	IPR003657	WRKY domain
PROSITE profile	PS50811	31.158	22	87	IPR003657	WRKY domain
SMART	SM00774	2.9E-33	27	86	IPR003657	WRKY domain
Pfam	PF03106	2.8E-25	28	85	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 132 aa Download sequence Send to blast
AEEVKRRKIE AAEYRIGFRT KSDVEIMDDG FKWRKYGKKA VKSSPNPRNY YRCSSSGCGV 60 KKRVERDRND PSYVITIYEG THNHKSPDES RHPYMSYEVP HSSSPWSSCA QIIPNLTPNF 120 TWNTQFAPFS YT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	6e-27	17	87	7	77	Probable WRKY transcription factor 4
2lex_A	6e-27	17	87	7	77	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020577278.1	2e-95	probable WRKY transcription factor 50
Swissprot	Q8VWQ5	3e-36	WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBL	A0A2I0B6D7	1e-48	A0A2I0B6D7_9ASPA; Putative WRKY transcription factor 50
STRING	GSMUA_Achr7P09680_001	9e-43	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP441	37	206

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	1e-38	WRKY DNA-binding protein 50

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821]