PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_12845 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | WRKY | ||||||||
Protein Properties | Length: 187aa MW: 20569.1 Da PI: 7.9591 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 86.6 | 2.3e-27 | 27 | 87 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDgy+WrKYGqK++ g++fprsY+rCt++ gC++k+kv++ + dp++ ei+Y geH+++ PEQU_12845 27 DDGYTWRKYGQKVILGARFPRSYFRCTHKnfyGCKAKRKVQKLDADPNIYEIIYCGEHTCQ 87 8***************************99999**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.9E-26 | 19 | 87 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.31E-24 | 25 | 88 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.7E-36 | 26 | 88 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 20.071 | 27 | 89 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.7E-25 | 27 | 87 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MIRKDSEETR TVTIPAVRTG NLELPPDDGY TWRKYGQKVI LGARFPRSYF RCTHKNFYGC 60 KAKRKVQKLD ADPNIYEIIY CGEHTCQTSP TPLILPSITP TSNETTLANM PVMIGASSSP 120 SVGSWFLSSH EVGESSRAHV GPQVQQQPIR TGREGEGSVA DLADAMFNSG SSSNNSMDTI 180 FTFKTDG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 2e-20 | 5 | 84 | 2 | 74 | Disease resistance protein RRS1 |
5w3x_D | 2e-20 | 5 | 84 | 2 | 74 | Disease resistance protein RRS1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00304 | DAP | Transfer from AT2G40740 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020572709.1 | 1e-138 | WRKY transcription factor 55-like | ||||
TrEMBL | A0A2I0X5Q6 | 3e-99 | A0A2I0X5Q6_9ASPA; WRKY transcription factor 55 | ||||
STRING | XP_008778512.1 | 5e-56 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9796 | 33 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40740.1 | 5e-36 | WRKY DNA-binding protein 55 |