PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_05343
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family M-type_MADS
Protein Properties Length: 214aa    MW: 23301.7 Da    PI: 4.6929
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_05343genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.83.2e-141153345
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                i+n   r +t+ kRr g+lKK  EL vLCd+ +  i++s++g+
  PEQU_05343 11 ISNRAARRITLRKRRLGLLKKLRELTVLCDVPAFAIVYSPQGT 53
                99**************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.8E-22160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.04152IPR002100Transcription factor, MADS-box
CDDcd002664.06E-21269No hitNo description
SuperFamilySSF554551.31E-18394IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-11323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-131152IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-112338IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-113859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MARKKTQLAY ISNRAARRIT LRKRRLGLLK KLRELTVLCD VPAFAIVYSP QGTEPEVWPS  60
PAAARDLIKG LDGAEGKGKE NNMMNQEGFL QKQIARARGQ LGRIMAENDE LAGELVLLQC  120
LGGRSVEGLE SYELGVVGGA LSRRIEAVEG RILMAEDGGV GQGEDLPVVI SPAPEMGETV  180
VDGGGCWTDK VLEWEAELIS EWGQWGTGFF FDEG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKTQLAYISNRAARRITLRKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020589657.11e-152agamous-like MADS-box protein AGL80
TrEMBLA0A2I0W3U21e-68A0A2I0W3U2_9ASPA; Agamous-like MADS-box protein AGL80
TrEMBLA0A455LA672e-69A0A455LA67_9ASPA; MADS-box protein-like protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26630.17e-22M-type_MADS family protein