PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s935191g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | Trihelix | ||||||||
Protein Properties | Length: 182aa MW: 21354.2 Da PI: 9.937 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 65.2 | 1.4e-20 | 3 | 64 | 1 | 65 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkik 65 +W+ +e+++Li++r ++e++++ +k++k+ We v+++mrerg++r+p qCk+kwen ryk++ PDK_30s935191g001 3 QWSPEETRDLIAIRGDLERDFNVSKRNKTMWEVVAARMRERGYRRTPDQCKCKWEN---RYKACM 64 7******************************************************8...666654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.793 | 1 | 60 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 1.8E-16 | 2 | 62 | No hit | No description |
CDD | cd12203 | 6.85E-22 | 2 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.6E-5 | 3 | 59 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MPQWSPEETR DLIAIRGDLE RDFNVSKRNK TMWEVVAARM RERGYRRTPD QCKCKWENRY 60 KACMWHPNWK GIGDSGSYWL NFQELSPLRR RAANRTLYTG KETADPETGK QCPFFEELHA 120 VFTERARNMQ RELLESESGA SHSKKKLKRL GADKSSDAQE TCSVNCLSLN QELPILRRNR 180 RG |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008802948.1 | 5e-68 | trihelix transcription factor GT-3b-like | ||||
TrEMBL | A0A2H3YS04 | 1e-66 | A0A2H3YS04_PHODC; trihelix transcription factor GT-3b-like | ||||
STRING | XP_008802948.1 | 2e-67 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10688 | 30 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38250.1 | 3e-22 | Trihelix family protein |