PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s929831g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

Trihelix

Protein Properties

Length: 440aa MW: 51121.6 Da PI: 6.9862

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s929831g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	70.4	3.3e-22	123	219	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpy 81 +Wt+ +v++Li++ +++ e + +kk++W+ vsk+m+er + +sp+qC++k+++lnkryk+++e+ +++ +++++++ ++ PDK_30s929831g001 123 KWTDAMVRLLITVISYLTEGTAELDssakkklavlQKKGKWKLVSKVMAERNCCVSPQQCEDKFNDLNKRYKRLTEILGRGtSCKVVENPVL 214 7************98888886322456678888********************************************66999999999 PP trihelix 82 fdqle 86 +d ++ PDK_30s929831g001 215 LDYMH 219 99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF81995	2.01E-5	29	81	No hit	No description
Pfam	PF13837	2.8E-20	121	245	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence Send to blast
MEGNMSAGNM MPGPSSYGSF DLQVSMAMHQ QQQQHGCFHH QQQQPTQTQN QGPMVHQPMN 60 SIFPQSVGQM NEREQQPMLQ MMDYSKVDHG KISTSEEDDT EDGADGPNKS ERGKKAAPWQ 120 RVKWTDAMVR LLITVISYLT EGTAELDSSA KKKLAVLQKK GKWKLVSKVM AERNCCVSPQ 180 QCEDKFNDLN KRYKRLTEIL GRGTSCKVVE NPVLLDYMHH ISDKVKDDVR KILSSKHLHY 240 EEMCSYHNKN RLHLPADPEV QRSVQSLLKT SDDHDAKRAA RDDFDENDQD EDSDDREDDL 300 EENDTLFRDI GGSCFPKRMK QGLVCEDVNF RNSLGPQNNP RRPNSQSISF DVNQVFPEGS 360 TTPWVQKQLI RSRSIQLEEQ RLQIQAEMLE IEKQQFKWKR FRKKKDRELD KMRIQNERMK 420 LENERLALEL KRRELVLDLN

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence Send to blast

MEGNMSAGNM MPGPSSYGSF DLQVSMAMHQ QQQQHGCFHH QQQQPTQTQN QGPMVHQPMN  60
SIFPQSVGQM NEREQQPMLQ MMDYSKVDHG KISTSEEDDT EDGADGPNKS ERGKKAAPWQ  120
RVKWTDAMVR LLITVISYLT EGTAELDSSA KKKLAVLQKK GKWKLVSKVM AERNCCVSPQ  180
QCEDKFNDLN KRYKRLTEIL GRGTSCKVVE NPVLLDYMHH ISDKVKDDVR KILSSKHLHY  240
EEMCSYHNKN RLHLPADPEV QRSVQSLLKT SDDHDAKRAA RDDFDENDQD EDSDDREDDL  300
EENDTLFRDI GGSCFPKRMK QGLVCEDVNF RNSLGPQNNP RRPNSQSISF DVNQVFPEGS  360
TTPWVQKQLI RSRSIQLEEQ RLQIQAEMLE IEKQQFKWKR FRKKKDRELD KMRIQNERMK  420
LENERLALEL KRRELVLDLN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017699023.1	0.0	uncharacterized protein LOC103710100 isoform X1
Refseq	XP_026661620.1	0.0	uncharacterized protein LOC103710100 isoform X1
Refseq	XP_026661621.1	0.0	uncharacterized protein LOC103710100 isoform X1
Refseq	XP_026661622.1	0.0	uncharacterized protein LOC103710100 isoform X1
Refseq	XP_026661623.1	0.0	uncharacterized protein LOC103710100 isoform X1
Refseq	XP_026661624.1	0.0	uncharacterized protein LOC103710100 isoform X1
Refseq	XP_026661625.1	0.0	uncharacterized protein LOC103710100 isoform X1
Refseq	XP_026661626.1	0.0	uncharacterized protein LOC103710100 isoform X1
Refseq	XP_026661627.1	0.0	uncharacterized protein LOC103710100 isoform X1
Refseq	XP_026661628.1	0.0	uncharacterized protein LOC103710100 isoform X1
Refseq	XP_026661629.1	0.0	uncharacterized protein LOC103710100 isoform X1
Refseq	XP_026661630.1	0.0	uncharacterized protein LOC103710100 isoform X1
Refseq	XP_026661631.1	0.0	uncharacterized protein LOC103710100 isoform X1
Refseq	XP_026661632.1	0.0	uncharacterized protein LOC103710100 isoform X1
Refseq	XP_026661633.1	0.0	uncharacterized protein LOC103710100 isoform X1
TrEMBL	A0A2H3ZRE9	0.0	A0A2H3ZRE9_PHODC; uncharacterized protein LOC103710100 isoform X1
STRING	XP_008793938.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2920	38	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	9e-86	sequence-specific DNA binding transcription factors