PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s923921g004
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 475aa    MW: 51576.2 Da    PI: 6.1477
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s923921g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.4e-05140161223
                        EETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                        +Cp C+k+F++   L  H+r+H
  PDK_30s923921g004 140 TCPECKKTFPSLKALYGHLRSH 161
                        6********************9 PP
2zf-C2H211.50.00093393415123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C+ C+ sF++   L  H+r+H
  PDK_30s923921g004 393 HQCTLCHASFPTGQALGGHMRRH 415
                        79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.73E-9138161No hitNo description
SMARTSM003550.014139161IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.12139161IPR007087Zinc finger, C2H2
PfamPF139128.5E-9141163IPR007087Zinc finger, C2H2
PROSITE patternPS000280141161IPR007087Zinc finger, C2H2
SuperFamilySSF576674.73E-9328355No hitNo description
PfamPF139127.5E-8332356IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.344333360IPR007087Zinc finger, C2H2
SMARTSM003550.2333355IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280335355IPR007087Zinc finger, C2H2
PfamPF139122.5E-11393416IPR007087Zinc finger, C2H2
SMARTSM003550.016393415IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.538393415IPR007087Zinc finger, C2H2
PROSITE patternPS000280395415IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MGAHPMDGGS YYQSEAAALG PEDGSVAAKQ KLAKNGLRIR FKCQKACELN EEVARGALSS  60
DWSLEGASDG DMRAHRISNG ELADDRDKHI ESPDHHRGDD DGFLAKMEEE NVPEKAVAED  120
PASSESKNED ANMAAEEPPT CPECKKTFPS LKALYGHLRS HPQRGYRGAN RPPEAKNKLQ  180
RGIDSSSDLA FPAAKWSVTA KRGRKGIIES NDPESNAARI LLQLSRGNDL APTPTLPREI  240
DRLRHRNRKS ILADIRIEMD EEDTKAKGLQ LKDAMHSELM NGNEDDEMEA GNDGNVEASS  300
SPSACGRKVK KKRIKDLESA ANEASPPTRG RRYHCSSCNR SFSTHQALGG HRASHNKNKN  360
NSEEVVAMDG MEADAEELVD SKGAVPRAAT AEHQCTLCHA SFPTGQALGG HMRRHWNGPV  420
NHPPLLPAAP STPAPSPAPS SSESVKEANK GLLDIDLNEL PKLEAEEQMI LEPSI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008805550.20.0zinc finger protein ZAT9-like
TrEMBLA0A2H3YYV20.0A0A2H3YYV2_PHODC; zinc finger protein ZAT9-like
STRINGXP_008805550.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1943657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.11e-19C2H2 family protein