PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s849451g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB_related
Protein Properties Length: 660aa    MW: 75888.5 Da    PI: 7.3606
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s849451g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.43.3e-08602645344
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 
                        +W++  +  l++a k ++++   +W+++a+ ++ g+t  qc+ ++
  PDK_30s849451g001 602 AWSETQERALIQALKTFPKDinqRWERVAAAVP-GKTVIQCRKKF 645
                        8********************************.********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1102.3E-2193199IPR001623DnaJ domain
SuperFamilySSF465651.31E-2095176IPR001623DnaJ domain
SMARTSM002712.7E-1497172IPR001623DnaJ domain
PROSITE profilePS5007618.34998180IPR001623DnaJ domain
CDDcd062571.90E-1398169IPR001623DnaJ domain
PfamPF002262.4E-1898177IPR001623DnaJ domain
PRINTSPR006256.1E-8103121IPR001623DnaJ domain
PRINTSPR006256.1E-8121136IPR001623DnaJ domain
PRINTSPR006256.1E-8152172IPR001623DnaJ domain
PROSITE patternPS006360157176IPR018253DnaJ domain, conserved site
PROSITE profilePS500906.307466521IPR017877Myb-like domain
SuperFamilySSF466892.77E-7466514IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.8E-5466514IPR009057Homeodomain-like
SMARTSM007173.0E-5470523IPR001005SANT/Myb domain
PfamPF002491.8E-5472513IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-6595645IPR009057Homeodomain-like
PROSITE profilePS5129310.974598653IPR017884SANT domain
SMARTSM007171.4E-7599651IPR001005SANT/Myb domain
SuperFamilySSF466891.5E-9600647IPR009057Homeodomain-like
CDDcd001671.08E-6602649No hitNo description
PfamPF002493.1E-7602645IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MDAHESPLLI THSPEILNGE PILISSNCLP VKAFNFEPAG HAFHSAALKF FGFCEEEDTD  60
TDDQSVLSDD RGQAYIPSSD FYSSRGKKKS VDGSKQQDHY ALLGLSHLRF LATEEQIRKS  120
YRETALKHHP DKQAALLLAE ETEEAKQTKK DEIESHFKAI QEAYEILIDP VKRRIYDSTD  180
EFDDDIPTDC APQDFFKVFG PAFMRNGRWS VNQPVPSLGD ENAPLNEVDS FYNFWYTFKS  240
WREFPHADDF DLEQAESRDH KRWMERQNAK LREKARKEEY ARIRALVDNA YKRDPRILKR  300
KEEEKAEKRR KKEAKFLARK LQEEEAARAA EEERRRKEEE EKRAAEAALN QKKLKEKEKK  360
LLRKERTRLR TLSAPVVSKN LLDLEEEDVE KVCMTLEMEQ LRHLCDDMER KEGIGRAQLL  420
KDALGRGNSN AMKQEAKSMQ PNGSQDSGAK SNRVIAQVKS DITLSNYEKK EKPWEKEEIE  480
MLRKGMQKYP KGTSRRWEVI SDYIGTGRSV EEILKATKTI LLQKPDSFKA FDSFLEKRKP  540
ALAISSPLTT RIEPDGLPVE GTQDSSSKMT TKQSTSTTNN QEPVDGVVLA LNGVSSGTEQ  600
DAWSETQERA LIQALKTFPK DINQRWERVA AAVPGKTVIQ CRKKFALMKE NFRSKKNAEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A9e-2019429720123Zuotin
5dje_B9e-2019429720123Zuotin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1333354RRRKEEEEKRAAEAALNQKKLK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008811954.10.0dnaJ homolog subfamily C member 2-like
RefseqXP_017702119.10.0dnaJ homolog subfamily C member 2-like
TrEMBLA0A2H4A0H40.0A0A2H4A0H4_PHODC; dnaJ homolog subfamily C member 2-like
STRINGXP_008811954.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81193440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain