PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s819711g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family AP2
Protein Properties Length: 285aa    MW: 31642.3 Da    PI: 9.4189
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s819711g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.66.5e-083483855
                AP2  8 wdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55
                       +++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  PDK_30s819711g001 34 RHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDREEKAARAYDLAALKYWG 83
                       79************5444.2455536655.779999**************98 PP
2AP2483e-15126177155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  PDK_30s819711g001 126 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 177
                        57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.5E-152797IPR001471AP2/ERF domain
PROSITE profilePS5103216.5682791IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.1E-112992IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-123493IPR016177DNA-binding domain
CDDcd000183.60E-133493No hitNo description
PfamPF008472.3E-53483IPR001471AP2/ERF domain
CDDcd000181.29E-23126187No hitNo description
SuperFamilySSF541711.7E-18126187IPR016177DNA-binding domain
PfamPF008471.0E-10126177IPR001471AP2/ERF domain
SMARTSM003809.7E-34127191IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-19127186IPR001471AP2/ERF domain
PROSITE profilePS5103219.151127185IPR001471AP2/ERF domain
PRINTSPR003675.6E-5128139IPR001471AP2/ERF domain
PRINTSPR003675.6E-5167187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MEASMIALSL SLSLSLFFSG LGILRGILRG ILGRHRWTGR YEAHLWDNSC RREGQSRKGR  60
QGGYDREEKA ARAYDLAALK YWGPNTTTNF PVSNYEKELE EMKNMTRQEF VASLRRKSSG  120
FSRGASIYRG VTRHHQHGRW QARIGRVAGN KDLYLGTFST QEEAAEAYDV AAIKFRGLNA  180
VTNFDMSRYD VESILNSDLP IGAVSSKAFK ASDSSSTSST SNAGHQAGGG DSFSLPSEQD  240
QDYWSLLALH QQQQQRNLAS GFEVFGSGVN MDFPGVMKIN GYCSM
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008789665.11e-163AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-114AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A2H3XW611e-162A0A2H3XW61_PHODC; AP2-like ethylene-responsive transcription factor AIL5
STRINGXP_008789664.11e-160(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-112AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]