PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s785891g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family WRKY
Protein Properties Length: 358aa    MW: 39898.2 Da    PI: 6.0539
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s785891g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.71e-27127188159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDg++WrKYGqK++ g+++pr+YYrCt++   gC ++k+v+rs+e+p+v+++tY+g+H+++
  PDK_30s785891g002 127 LDDGHSWRKYGQKDILGATYPRGYYRCTHRntqGCLATKQVQRSDENPSVFDVTYHGTHTCH 188
                        59***************************98889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.343122185IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-27124189IPR003657WRKY domain
SuperFamilySSF1182902.62E-25126189IPR003657WRKY domain
SMARTSM007743.0E-40127189IPR003657WRKY domain
PfamPF031062.2E-26128188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MENGAGSDRS LLVAELTQIR ELARQMEAHL DQPCPIEFCK PLAEKILSSI DKSICMAKKS  60
DSEGQQQQQQ LAGTDSPRSA TESPHSENSN QAFRDYDRKE MSKKRKTLPR WTSQIKVCPG  120
EGVEGPLDDG HSWRKYGQKD ILGATYPRGY YRCTHRNTQG CLATKQVQRS DENPSVFDVT  180
YHGTHTCHQR SQSVPKSASR ERELKQNKPN SQEHSQQQQD QNLLLTFQRD LKVITQGLGS  240
EAQDKSSLSF SFPSTPVSGV KAEDLFFSSP SALDNGFTGS FSPSFLSQTS ASNYFSVSPC  300
RMSYHGGGFN LQTAESDLIE IMSAATSDTN SPLMDLDFML EPVEFDPKFQ LDVSSFFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-18127187868OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008775571.10.0probable WRKY transcription factor 41
TrEMBLA0A2H3WYD80.0A0A2H3WYD8_PHODC; probable WRKY transcription factor 41
STRINGXP_008775571.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.12e-49WRKY family protein