PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s763631g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family Trihelix
Protein Properties Length: 379aa    MW: 43879.3 Da    PI: 6.6513
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s763631g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix81.98.5e-2657154186
           trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcp 80 
                        +Wt+ +v++Li+a+++++e+  ++            +kk++W+++sk+m+erg+ +sp+qC++k+++lnkryk+++++ +++ +++++++ +
  PDK_30s763631g002  57 KWTRAMVRLLITAVSYIGEDAMSEYnsggrrkytllQKKGKWKAISKVMAERGCYVSPQQCEDKFNDLNKRYKRLTDILGRGtSCKVVENPV 148
                        7**************998887764234566778888**********************************************669******* PP

           trihelix  81 yfdqle 86 
                        ++dq++
  PDK_30s763631g002 149 LLDQMD 154
                        ****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.3E-2255179No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MQDCNQQPAV PVTDYNKGEH GKASLSDDDD QNFTEDGVDG QNEAGNGKKG FPWQRMKWTR  60
AMVRLLITAV SYIGEDAMSE YNSGGRRKYT LLQKKGKWKA ISKVMAERGC YVSPQQCEDK  120
FNDLNKRYKR LTDILGRGTS CKVVENPVLL DQMDISDKLK EDARKILSSK HLFYEEMCSY  180
HNGNRLNLPH DPALHRSLQL VLRSREEHDI RRAVHEDIDE DDQSADTDNE EDDAEEHTVL  240
HGDIGGSCIP KRIKHLVDHE EVGFGNPSGS QDCTRRLHPQ GMSVDMNQVL PEGSTVAWGQ  300
NNTMSSRSLQ LEDQRLNIQL QMLELERQRF KWQRFSKKKD RELNKMRMEN GRMKLENERL  360
ALELKRKEFE IDLNMKRNQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008781414.10.0uncharacterized protein LOC103701210 isoform X2
TrEMBLA0A2H3XBP60.0A0A2H3XBP6_PHODC; uncharacterized protein LOC103701210 isoform X2
STRINGXP_008781412.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29203886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-125sequence-specific DNA binding transcription factors