PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s745091g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | Trihelix | ||||||||
Protein Properties | Length: 324aa MW: 36389.6 Da PI: 7.992 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 47.8 | 3.8e-15 | 25 | 111 | 2 | 73 |
trihelix 2 WtkqevlaLiearr.........emeerlrrgk..............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 Wt +e+++Liea++ + + +W++v +++++ g+ rs++qC+++w+nl +++kk+++ e + PDK_30s745091g001 25 WTLNETMVLIEAKKidnerrmkrS--------IesegreggsssssrPSEMRWKWVEDYCWRCGCYRSQNQCNDRWDNLMRDFKKVRAYEMS 108 **************6555444442........133334444555555999*************************************98877 PP trihelix 71 rts 73 + PDK_30s745091g001 109 LGA 111 644 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.224 | 17 | 96 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 5.4E-11 | 24 | 106 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MADKSAMFGV VGGEERRREY RKGNWTLNET MVLIEAKKID NERRMKRSIE SEGREGGSSS 60 SSRPSEMRWK WVEDYCWRCG CYRSQNQCND RWDNLMRDFK KVRAYEMSLG AEEGDRLSYW 120 KLDRHERKER NLPSNLLPGI YEALIEVVDR RGVEGVSGSI SNMAELVGDE RHMGSTSASM 180 PPVMQHNRPV PTSQGPQPPP LSPTHELPQA QAAGTIDSDD DEHSNSPERK RRRGEGSSSK 240 NSSHKLTSAI SKSASILAEA FQAGEEKEER RHNDLRRIEE RKAKMEQSKA EISIQSMDGL 300 AAAINQLASS ILGSLADKGP AAPK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 228 | 232 | RKRRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008787373.1 | 0.0 | trihelix transcription factor ASR3 | ||||
TrEMBL | A0A2H3XQR9 | 0.0 | A0A2H3XQR9_PHODC; trihelix transcription factor ASR3 | ||||
STRING | XP_008787373.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3294 | 35 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35640.1 | 1e-47 | Trihelix family protein |