PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s730541g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

TALE

Protein Properties

Length: 529aa MW: 58502.4 Da PI: 9.4627

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s730541g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	24.4	4.9e-08	311	348	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ ++ LA++ gL+ +qV++WF N R + PDK_30s730541g001 311 FEHflHPYPNDVDKHILARQAGLSRSQVSNWFINARVR 348 664459******************************88 PP
2	BELL	78.6	8.5e-26	181	243	4	72
BELL 4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 elq++kakLls+leeVd+ Y++y++q+++ + ag g+a++Y lA+ka+SrhFrcL+dai++ i PDK_30s730541g001 181 ELQRRKAKLLSMLEEVDRGYRKYCKQMRVAM------AGEGAAAIYSGLASKAMSRHFRCLRDAIVGEI 243 89************************976......8*************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.7E-44	117	241	IPR006563	POX domain
Pfam	PF07526	1.8E-36	123	240	IPR006563	POX domain
PROSITE profile	PS50071	11.904	289	352	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.3E-26	291	367	IPR009057	Homeodomain-like
CDD	cd00086	1.42E-9	292	353	No hit	No description
SMART	SM00389	5.6E-7	292	356	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.01E-16	293	359	IPR009057	Homeodomain-like
Pfam	PF05920	1.8E-16	309	348	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence Send to blast
MLGPPSKHPS SNLGRGFIPP DFLEASNKNL MVAAEAAASA SPWQVDDSSL RSLFPCQGTS 60 EQPGGRLSLS LFNPKPSDAI GVPQSFHQSD SRDVFLSRAK SSHQQQVFMQ EGRVFNSQQP 120 FQLKNSKYLI PAKELLNEFC SLRGEISSKK RSQKASQWEE GGPSSSSSSW NQSLNSMDLL 180 ELQRRKAKLL SMLEEVDRGY RKYCKQMRVA MAGEGAAAIY SGLASKAMSR HFRCLRDAIV 240 GEIRATKKAI GEKDTASPGT TRGETPRLKL LDQRLRQHQA FQQAGLIESH SWRPQRGLPE 300 RSVSILRAWL FEHFLHPYPN DVDKHILARQ AGLSRSQVSN WFINARVRLW KPMVEEMYSE 360 DMKEQDNLSS HAATSHQDNN TSSNPNHNSS LSQKPAPGQL LNDSDSLSSI INGSHRSDGK 420 NTVNAEASQR HNPQQQAENF GVVELDISSY GSCGNQNLRG GVSLTLGLQQ NSGAGKTLSF 480 SPASQHSLLF SREHIDDGQQ LQFAILDGEA RTLPYRNVMG AQLLHDLAG

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence Send to blast

MLGPPSKHPS SNLGRGFIPP DFLEASNKNL MVAAEAAASA SPWQVDDSSL RSLFPCQGTS  60
EQPGGRLSLS LFNPKPSDAI GVPQSFHQSD SRDVFLSRAK SSHQQQVFMQ EGRVFNSQQP  120
FQLKNSKYLI PAKELLNEFC SLRGEISSKK RSQKASQWEE GGPSSSSSSW NQSLNSMDLL  180
ELQRRKAKLL SMLEEVDRGY RKYCKQMRVA MAGEGAAAIY SGLASKAMSR HFRCLRDAIV  240
GEIRATKKAI GEKDTASPGT TRGETPRLKL LDQRLRQHQA FQQAGLIESH SWRPQRGLPE  300
RSVSILRAWL FEHFLHPYPN DVDKHILARQ AGLSRSQVSN WFINARVRLW KPMVEEMYSE  360
DMKEQDNLSS HAATSHQDNN TSSNPNHNSS LSQKPAPGQL LNDSDSLSSI INGSHRSDGK  420
NTVNAEASQR HNPQQQAENF GVVELDISSY GSCGNQNLRG GVSLTLGLQQ NSGAGKTLSF  480
SPASQHSLLF SREHIDDGQQ LQFAILDGEA RTLPYRNVMG AQLLHDLAG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	1e-14	298	356	5	63	Homeobox protein Meis2
3k2a_B	1e-14	298	356	5	63	Homeobox protein Meis2
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Functional Description ? help Back to Top
Source	Description
UniProt	Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269\|PubMed:12244239, ECO:0000269\|PubMed:17693535, ECO:0000269\|PubMed:22786869}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026661887.1	0.0	homeobox protein BEL1 homolog
Swissprot	Q38897	1e-116	BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBL	A0A3Q0I8Z3	0.0	A0A3Q0I8Z3_PHODC; homeobox protein BEL1 homolog
STRING	XP_008794767.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6398	35	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41410.1	1e-108	TALE family protein

Publications ? help Back to Top
Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684] Lozano-Sotomayor P, et al. Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana. Plant J., 2016. 88(3): p. 437-451 [PMID:27402171]