PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s691921g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family WRKY
Protein Properties Length: 262aa    MW: 28643.4 Da    PI: 9.316
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s691921g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.61.1e-32104161259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        +Dgy+WrKYGqK vk+s+ prsYYrCtsa C vkk+vers+ dp+vv++tYeg+H+h+
  PDK_30s691921g002 104 EDGYRWRKYGQKAVKNSHSPRSYYRCTSAMCGVKKRVERSSVDPTVVITTYEGQHTHP 161
                        8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-3389163IPR003657WRKY domain
SuperFamilySSF1182901.44E-2795163IPR003657WRKY domain
PROSITE profilePS5081130.36698163IPR003657WRKY domain
SMARTSM007741.1E-37103162IPR003657WRKY domain
PfamPF031061.2E-25104161IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MMMKKREEKM EVAAVAGVSP FVADQATHSA APPESSPVTP NSSSISSSST EAATDTDPAK  60
PQPQEDEQDK AKKIDLKGGK NKRQKRQSEP RFAFMTKSEV NHLEDGYRWR KYGQKAVKNS  120
HSPRSYYRCT SAMCGVKKRV ERSSVDPTVV ITTYEGQHTH PSPVVPRGVH PALSLPLAAE  180
MPPPPPAGPG FVLPSLQAKE IHLPYFTSYL PPPPTDFRLA SAGIITAPSG DLRHCTPAAD  240
ILNRNRGLLQ DVIPSDIRNN EE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-2593163777Probable WRKY transcription factor 4
2lex_A2e-2593163777Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8614086e-41DQ861408.1 Cocos nucifera WRKY1 gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008776831.10.0probable WRKY transcription factor 48
TrEMBLA0A2H3X1C00.0A0A2H3X1C0_PHODC; probable WRKY transcription factor 48
STRINGXP_008776831.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21253796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.17e-43WRKY DNA-binding protein 23