PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s659481g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family B3
Protein Properties Length: 193aa    MW: 21794.9 Da    PI: 6.6543
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s659481g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.48.2e-1683172398
                        EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                 B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                         v+t+s v +  ++++pk+f +     +++     +   ++++We+++  +++ +r  + +GWk+F+ +n+Lk+gD +v++l+++++ ++ v
  PDK_30s659481g001  83 CVMTKSQVQAPFQMTIPKNFWTLLP--SAC--IPAVLCYRNKTWEMRYYGDRNLKR--FDSGWKHFAVDNNLKVGDACVLELMDDKNLKFQV 168
                        58999***************95443..223..234455689*******44666666..9************************99***9999 PP

                        EEE- CS
                 B3  95 kvfr 98 
                        +++r
  PDK_30s659481g001 169 RILR 172
                        9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-1977172IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.0E-1977172IPR015300DNA-binding pseudobarrel domain
CDDcd100172.16E-1879172No hitNo description
SMARTSM010195.5E-881174IPR003340B3 DNA binding domain
PROSITE profilePS5086311.95681174IPR003340B3 DNA binding domain
PfamPF023622.8E-1481173IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MDSTYSKNVG NLMDRHGINL FESLTEDCNL HHMSEYLCPL SKSSKNGDNK VGHFAPFSSP  60
SDPATIDEKD GTVPLSGKPY FACVMTKSQV QAPFQMTIPK NFWTLLPSAC IPAVLCYRNK  120
TWEMRYYGDR NLKRFDSGWK HFAVDNNLKV GDACVLELMD DKNLKFQVRI LRGDIPREIA  180
ESGCSSDTPI MIE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008802551.11e-116B3 domain-containing protein Os04g0386900-like
TrEMBLA0A2H3YR231e-115A0A2H3YR23_PHODC; B3 domain-containing protein Os04g0386900-like
STRINGXP_008802551.11e-116(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89543545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-09B3 family protein