PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s655093g008 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | C2H2 | ||||||||
Protein Properties | Length: 435aa MW: 47306.6 Da PI: 8.5492 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.9 | 0.00034 | 124 | 143 | 2 | 21 |
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C Cgk+F++ L H+r PDK_30s655093g008 124 TCAVCGKTFPSLKALYGHLR 143 6*****************98 PP | |||||||
2 | zf-C2H2 | 20.5 | 1.3e-06 | 287 | 309 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C +CgksFs++ L H+ +H PDK_30s655093g008 287 YRCRICGKSFSTHQALGGHMASH 309 9*******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.56E-11 | 123 | 145 | No hit | No description |
SMART | SM00355 | 0.093 | 123 | 145 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.328 | 123 | 150 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 9.6E-9 | 125 | 147 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 125 | 145 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.56E-11 | 282 | 309 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.1E-6 | 282 | 312 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 5.3E-9 | 286 | 311 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 5.1E-4 | 287 | 309 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.133 | 287 | 314 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 289 | 309 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.4E-10 | 349 | 372 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.46 | 349 | 371 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 351 | 371 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 435 aa Download sequence Send to blast |
MGAHPVDGRS YYQSEAPALG PEDGSVAANG KLAKTRFRIR LNKCEKAGEQ NEEAAREEAV 60 SSDRSLRRAS DGDMRARHVS NGELADDRDE HTESQNVADG TVVEDPGSSE SKNGGDNVAE 120 GPPTCAVCGK TFPSLKALYG HLRCHRQRDY RGAHRPPEAK KKRKKKKKIQ IGAGSSSNKA 180 LTAKRGHKGI LDLKDPEANA AEILLQMSRS NNLRPTPCNI GRGKRKEMDE DAMHSENADG 240 IEGECTGVEA SSSQSVFEGE VKKEKKKKIK DLESVHESSP PTRDRRYRCR ICGKSFSTHQ 300 ALGGHMASHN KSKNNSEEGD GTEDSNLAHA DEELADSNTL VPGTATTEHR CKTCQAAFPT 360 GQALGGHKRK HWNGPAMASA TVAPPPPAPS SESVKEELSI LENSSYSGTH EHITSYPPRG 420 WKIKEIILKV FMRAF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 159 | 167 | KKKRKKKKK |
2 | 160 | 164 | KKRKK |
3 | 161 | 167 | KRKKKKK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017699489.1 | 0.0 | zinc finger protein ZAT9-like | ||||
Refseq | XP_026662348.1 | 0.0 | zinc finger protein ZAT9-like | ||||
Refseq | XP_026662349.1 | 0.0 | zinc finger protein ZAT9-like | ||||
TrEMBL | A0A2H3ZSX3 | 0.0 | A0A2H3ZSX3_PHODC; zinc finger protein ZAT9-like | ||||
STRING | XP_008805550.1 | 1e-131 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP19436 | 5 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49930.1 | 8e-17 | C2H2 family protein |