PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1106101g002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | NAC | ||||||||
Protein Properties | Length: 685aa MW: 76372.7 Da PI: 4.5612 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165.8 | 1.5e-51 | 35 | 166 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lp GfrF+Ptdeelv++yLk k++g+ +++ vi+evd++k+ePwdLp k +++++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd PDK_30s1106101g002 35 LPLGFRFRPTDEELVNHYLKGKINGRINSEVVVIPEVDVCKCEPWDLPdKsLIRSDDPEWFFFTPRDRKYPNGHRANRATEAGYWKATGKD 125 699***********************9888788**************96446677888********************************* PP NAM 90 kevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++k + +l+g+kktLvfy+grap+g++++W+mheyr PDK_30s1106101g002 126 RMIKTKppGPSLIGMKKTLVFYRGRAPNGVRSNWIMHEYRT 166 *****9988899***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.27E-55 | 28 | 171 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.075 | 35 | 188 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.5E-27 | 36 | 165 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0071470 | Biological Process | cellular response to osmotic stress | ||||
GO:1900426 | Biological Process | positive regulation of defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005789 | Cellular Component | endoplasmic reticulum membrane | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 685 aa Download sequence Send to blast |
MICFEGFGNP SCILSLIVVE AVVVRRKCVL PPESLPLGFR FRPTDEELVN HYLKGKINGR 60 INSEVVVIPE VDVCKCEPWD LPDKSLIRSD DPEWFFFTPR DRKYPNGHRA NRATEAGYWK 120 ATGKDRMIKT KPPGPSLIGM KKTLVFYRGR APNGVRSNWI MHEYRTSESE FDSGEQVGSQ 180 FLGPEYEQLD LDDFPNISSQ MPLSMEYSIS DIVDQGLHKK NLVLADYSVS EFLDEVLSNQ 240 DEDSLEVTDT QKDSVPRIVS DDHFCMIEED SLWDSASGKE SGSGSDVDTV AAIIQDGLEF 300 DASACSYESA FLASGSSHTE NNKAYHVTRL DQDSLLLEEA KTGLPLRNRS LRQNVSSMGS 360 AANFWDQEST RKLEFIKDGL SNNLFNSTER PTCQASTSGT GIEIRTRQDP PSLDDLMEEQ 420 GLAFRRLLLQ KINHTGSISG TDRELSSKKD DNEVKSVITE SGECAEHQIA EDTEVSGSIF 480 LDDVDSTSDH GSISGTDREL SSKKDDNEVK SVITESGECA EHQIAEDTEV SGSIFLDNVD 540 STSDHDDTTS TEARTAFSEI SREPKSVLRR RRRGAHENSD KLEVLSLHAE SPAFYTTQWK 600 TCSCYSATAT FRTARGYFHY TMGYLPTSHR TATLECQGQL PITSPQDRCN AAELLRLAEL 660 EKGWLVAVRR FTAFAECIFA IPTVA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-44 | 34 | 165 | 14 | 139 | Stress-induced transcription factor NAC1 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00108 | PBM | Transfer from AT4G35580 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008783552.1 | 0.0 | protein NTM1-like 9 | ||||
TrEMBL | A0A2H3XGT2 | 0.0 | A0A2H3XGT2_PHODC; protein NTM1-like 9 | ||||
STRING | XP_008783552.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13413 | 25 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.3 | 8e-70 | NAC transcription factor-like 9 |