PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1078511g002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | WRKY | ||||||||
Protein Properties | Length: 185aa MW: 20290.3 Da PI: 4.8252 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 85.6 | 4.7e-27 | 6 | 66 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDgy+WrKYGqKe+ gs+fprsYYrCt++ gC++kk+v+r ++dp + e++Y g+H ++ PDK_30s1078511g002 6 DDGYTWRKYGQKEILGSKFPRSYYRCTHKsyyGCEAKKQVQRLDDDPYTYEVKYCGTHSCQ 66 8***************************99999*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.3E-25 | 4 | 67 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-24 | 4 | 67 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-34 | 5 | 67 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.0E-25 | 6 | 66 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.712 | 6 | 68 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MEIPPDDGYT WRKYGQKEIL GSKFPRSYYR CTHKSYYGCE AKKQVQRLDD DPYTYEVKYC 60 GTHSCQTSTA PLLIPSMAPT NDNSSSNPQG EALMPEAPAQ PHSSLLASTE LGIWFSREFE 120 HGQRETQPLI VPHGGEGSST QAGPSHLQGG REVDCPVADL ADAMFNSGSS GSSMDAFFSQ 180 PSQDN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 1e-20 | 6 | 66 | 9 | 69 | OsWRKY45 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008778512.1 | 1e-138 | WRKY transcription factor 55-like | ||||
TrEMBL | A0A2H3X578 | 1e-137 | A0A2H3X578_PHODC; WRKY transcription factor 55-like | ||||
STRING | XP_008778512.1 | 1e-137 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9796 | 33 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40740.1 | 2e-35 | WRKY DNA-binding protein 55 |