PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1075031g002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | NAC | ||||||||
Protein Properties | Length: 224aa MW: 25887.5 Da PI: 9.1828 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 83.3 | 5e-26 | 110 | 209 | 41 | 128 |
NAM 41 kvePwdLpk...........kvkaeek...ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkge 117 + +P L+ ++ +e+ +wyf ++r +kya+g+r+nr++ sgyWkatg+d++++s+kg+++g+kk+L+fy g++p g+ PDK_30s1075031g002 110 EPHPTYLHIiidtetlnfaeRY--DEQfggNWYFLTPRYRKYAHGSRPNRSAGSGYWKATGSDTDIISRKGKKMGVKKSLTFYLGEQPGGT 198 3466666533445544433222..2334569************************************************************ PP NAM 118 ktdWvmheyrl 128 kt W+m+eyr+ PDK_30s1075031g002 199 KTIWLMDEYRI 209 *********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 27.194 | 82 | 224 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.7E-13 | 97 | 209 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.09E-26 | 120 | 211 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MEGRRKVVVA ALQFACSDSV SDNVATAERL KARLVAKSYS QIYGLDYSET LSCNVKNVFL 60 HGDLQEDVYM EQPPRKKGVK HFLELCCFFE KEKTEKQRKL RKKIPAIYDE PHPTYLHIII 120 DTETLNFAER YDEQFGGNWY FLTPRYRKYA HGSRPNRSAG SGYWKATGSD TDIISRKGKK 180 MGVKKSLTFY LGEQPGGTKT IWLMDEYRID EFQQPINPES MLVS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-27 | 139 | 211 | 73 | 144 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-27 | 139 | 211 | 73 | 144 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-27 | 139 | 211 | 73 | 144 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-27 | 139 | 211 | 73 | 144 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-27 | 139 | 211 | 76 | 147 | NAC domain-containing protein 19 |
3swm_B | 7e-27 | 139 | 211 | 76 | 147 | NAC domain-containing protein 19 |
3swm_C | 7e-27 | 139 | 211 | 76 | 147 | NAC domain-containing protein 19 |
3swm_D | 7e-27 | 139 | 211 | 76 | 147 | NAC domain-containing protein 19 |
3swp_A | 7e-27 | 139 | 211 | 76 | 147 | NAC domain-containing protein 19 |
3swp_B | 7e-27 | 139 | 211 | 76 | 147 | NAC domain-containing protein 19 |
3swp_C | 7e-27 | 139 | 211 | 76 | 147 | NAC domain-containing protein 19 |
3swp_D | 7e-27 | 139 | 211 | 76 | 147 | NAC domain-containing protein 19 |
4dul_A | 7e-27 | 139 | 211 | 73 | 144 | NAC domain-containing protein 19 |
4dul_B | 7e-27 | 139 | 211 | 73 | 144 | NAC domain-containing protein 19 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13130 | 21 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52890.1 | 4e-28 | NAC domain containing protein 19 |