PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ote100087930001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 394aa MW: 43110.7 Da PI: 7.5566 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.9 | 5.6e-11 | 327 | 371 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++Er RR +i +++ +L+e++P+ k + +++L +Av+YIk+L Ote100087930001|100087930001 327 SIAERVRRTKISERMRKLQEVVPNM----EKQTNTSDMLDLAVDYIKEL 371 689*********************6....4679**************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.551 | 321 | 371 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.37E-15 | 324 | 383 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.59E-11 | 325 | 376 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.4E-14 | 326 | 385 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.4E-8 | 327 | 371 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.8E-11 | 327 | 377 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 394 aa Download sequence Send to blast |
MNNHEQFQQN TQMGIGSGLT RYRSAPSSYF ASFTSSDGGF GEYDFAQLFN PRASSPETQL 60 IFSRFMNGSG ATQQTCPSNM APPPQQNPAL LQRQSDDYSS ASQIMYANHT SEAAPDSAAV 120 DGAFASFNSN CAAAAQRKME RPAPLIRHSS SPAGLFAKIN IENEFKTMRG VGSYGGGISA 180 NAEASFSSGS KLTRRMDYSS RHASSGMMDP IQEIGSKGMG ENAVDDEDHG NDVEYITGLP 240 ANSWDDSALM SDHYLNGVAN NDSKSFYSAN ASDDQKSEAS DRPKTLLSHH LSLPKSSAEL 300 SAMEKLLQDS VPCKIRAKRG CATHPRSIAE RVRRTKISER MRKLQEVVPN MEKQTNTSDM 360 LDLAVDYIKE LRRQVKMLSD NQANCNCSAK RRRS |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00646 | PBM | Transfer from LOC_Os08g39630 | Download |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011080320.1 | 1e-152 | transcription factor bHLH130 | ||||
TrEMBL | A0A0H3YC40 | 1e-153 | A0A0H3YC40_SALMI; Basic helix-loop-helix transcription factor | ||||
STRING | Migut.D00568.1.p | 1e-113 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4605 | 22 | 39 |