PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100025000011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C2H2
Protein Properties Length: 288aa    MW: 31721.2 Da    PI: 8.4619
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100025000011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.6e-05260282223
                                   EETTTTEEESSHHHHHHHHHH.T CS
                       zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                                    Cp+C+k F+++  L+ H  + H
  Ote100025000011|100025000011 260 ICPKCSKGFRDPVKLVEHVERdH 282
                                   5*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183103.14E-11753No hitNo description
Gene3DG3DSA:4.10.1110.103.5E-101053IPR000058Zinc finger, AN1-type
PROSITE profilePS510398.0221059IPR000058Zinc finger, AN1-type
PfamPF014281.1E-121351IPR000058Zinc finger, AN1-type
SMARTSM001540.00541352IPR000058Zinc finger, AN1-type
SuperFamilySSF1183101.2E-956147No hitNo description
Gene3DG3DSA:4.10.1110.104.7E-1190158IPR000058Zinc finger, AN1-type
PROSITE profilePS510398.14398151IPR000058Zinc finger, AN1-type
PfamPF014281.7E-8101141IPR000058Zinc finger, AN1-type
SMARTSM001540.0029101142IPR000058Zinc finger, AN1-type
SMARTSM003550.053225248IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280227248IPR007087Zinc finger, C2H2
SMARTSM003557.7259282IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280261282IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MGTPAIPDLG KHCSVSDCRL IDFLPFTCDC CQKVFCLEHR SYSRHKCPKA SKHDVTIVIC  60
PLCAKGVRLI HDEDPNITWE SHVNIECDPS NYEQATKKRK CPVPRCKELL TFSNTIKCRD  120
CNIDHCLKHR FGPDHSCPGP KKPEPAFQFM GFLNKSRKND TKQAAATPSS KWSSSFLNLA  180
SSVRASAEAG IAKLSNEFNQ AVSTNGGAES SSNTRNSGSG SQHVEVCPQC KLRFANVGAL  240
VEHVEKVHEK NGVMKATLDI CPKCSKGFRD PVKLVEHVER DHGGVSKA
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075237.11e-168zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
SwissprotQ8VZ421e-118SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLA0A4D9B0F51e-171A0A4D9B0F5_SALSN; Uncharacterized protein
STRINGMigut.J01765.1.p1e-157(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53112237