PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_27452A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 192aa MW: 20697.6 Da PI: 10.4294 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 64.2 | 1.4e-20 | 17 | 57 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 rie++ rqv fskRr+g++KKA+ELS+LC+a+va ++fs+ Oropetium_20150105_27452A 17 RIESDEARQVCFSKRRAGLFKKASELSTLCGADVAAVVFSP 57 8**************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 23.422 | 8 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.92E-23 | 8 | 62 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.4E-28 | 8 | 67 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.4E-16 | 10 | 30 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.6E-23 | 17 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.4E-16 | 30 | 45 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.4E-16 | 45 | 66 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MAPRRPSMGR QKIEIRRIES DEARQVCFSK RRAGLFKKAS ELSTLCGADV AAVVFSPPAR 60 PSPSGTHPAA AGLTSAGDRA VSELNRQYGE LRALLDAEKA RQERADEAMR KERAANSPAM 120 ALIDPDLGAM RYYELVAFER ALTSVQAAVR ASADQLLRDA LLVDMMGRRG RQSATPQLAG 180 AGRGGGVLDF NN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_27452A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU962654 | 1e-84 | EU962654.1 Zea mays clone 244495 DNA binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806827.1 | 5e-79 | agamous-like MADS-box protein AGL29 | ||||
Swissprot | Q4PSU4 | 1e-20 | AGL61_ARATH; Agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A1E5VA38 | 4e-79 | A0A1E5VA38_9POAL; Agamous-like MADS-box protein AGL61 | ||||
STRING | Pavir.J11717.1.p | 8e-79 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1224 | 36 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 6e-23 | AGAMOUS-like 61 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_27452A |
Publications ? help Back to Top | |||
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