PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_23974A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C3H
Protein Properties Length: 629aa    MW: 68359.7 Da    PI: 5.2821
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_23974AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.11e-05439461225
                                -S---SGGGGTS--TTTTT-SS-S CS
                    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                                k ++C++fa  G C  G+ C++ H
  Oropetium_20150105_23974A 439 KSKPCKHFAT-GSCLKGEDCPYDH 461
                                6789**9988.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.638408435IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5409433IPR000571Zinc finger, CCCH-type
SMARTSM003560.016409434IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-6437463IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.76437464IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-6438462IPR000571Zinc finger, CCCH-type
SMARTSM003560.041465488IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.441467489IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
MDDALAPPPL ASSLTPTAAA VLTRRRSHLD SASYRTLSRL FSHCFHLHPS CHEGSAPPEA  60
ELAAANPTDV PSGDSPPVPR DADFDRPTKD ADNQMVASEI PSRPMTSLPA RDQPYVANRT  120
CEPGEDVATQ IEIENMGVLV ESTCDKPGAM SEEPVVEARM EVEDEALKSV KACLEGEVDE  180
GLEEGVGIDN GQLLLDAIMT NFTGLIDDIA VGSMPALSCV VSEGELRNNK EFEESKQLGG  240
GTEEGRPASN SRQFDGDGFE EGEIEGELQD LDAEESGSEP ADDEEPGGSS VSRPSGANES  300
CSQEMHRGNA YLTPENNGID DLVLNKDVNV RNGQLNVTRA QSVNYGDVLD WNETPPPDDK  360
DSKSGKKRKR HVTEERKAKK TKNKRINRAQ KRIAEGVHKL KLQPVIKPKT VKPCHFYNHG  420
KCQQGDSCKF SHDFTPSTKS KPCKHFATGS CLKGEDCPYD HELSKYPCHK YESGMCFRGD  480
KCKFSHVLST TEGTSTTEAK KTHVLLGFEK TSLTEKTSSQ KTSTVHIAAG IPAPIKQQYS  540
ILENLAGISI NSQNGATRVP KGVQFLPFSR DGSNSSSTHQ DAFSIQKHRN ANGSKHLDLG  600
GHQAEGQKIL KENEQGPVTL LDEKNSSKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_23974A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817940.10.0zinc finger CCCH domain-containing protein 7
RefseqXP_025817941.10.0zinc finger CCCH domain-containing protein 7
RefseqXP_025817942.10.0zinc finger CCCH domain-containing protein 7
SwissprotQ657B31e-152C3H7_ORYSJ; Zinc finger CCCH domain-containing protein 7
TrEMBLA0A2T7DKP60.0A0A2T7DKP6_9POAL; Uncharacterized protein
STRINGPavir.Eb02489.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88383743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.23e-06C3H family protein
Publications ? help Back to Top
  1. Noller B,Fischer I
    Photodissociation dynamics of the 2-propyl radical, C3H7.
    J Chem Phys, 2007. 126(14): p. 144302
    [PMID:17444707]
  2. Ali MA,Dillstrom VT,Lai JY,Violi A
    Ab initio investigation of the thermal decomposition of n-butylcyclohexane.
    J Phys Chem A, 2014. 118(6): p. 1067-76
    [PMID:24344976]