PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_23513A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C3H
Protein Properties Length: 371aa    MW: 41905.3 Da    PI: 7.6251
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_23513AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.67.1e-06426326
                               S---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                               ++lC+f++  G C  G+ C F+H+
  Oropetium_20150105_23513A  4 RVLCKFYMH-GACLKGEYCEFSHD 26
                               689**8888.*************5 PP
2zf-CCCH28.42.8e-093454526
                               --SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                                C f+++ G C+yG+rC++ H+
  Oropetium_20150105_23513A 34 VCTFYQK-GACSYGSRCRYDHV 54
                               5******.*************7 PP
3zf-CCCH23.11.3e-07151172426
                                ---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                                ++C+ fa+ G C+yG++C  +Hg
  Oropetium_20150105_23513A 151 PICS-FAAAGNCPYGESCLQMHG 172
                                6788.*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.01127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-6426IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.305628IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5582956IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-43055IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-53153IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-73454IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-43453IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.136147174IPR000571Zinc finger, CCCH-type
SMARTSM003560.0025148173IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-4151172IPR000571Zinc finger, CCCH-type
SuperFamilySSF578502.52E-11207280No hitNo description
Gene3DG3DSA:3.30.40.108.0E-10209275IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001620.00141215275No hitNo description
SMARTSM001842.7E-7216273IPR001841Zinc finger, RING-type
PfamPF000973.3E-7216273IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.12216274IPR001841Zinc finger, RING-type
PROSITE patternPS005180240249IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.676303332IPR000571Zinc finger, CCCH-type
SMARTSM003560.011303331IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MCIRVLCKFY MHGACLKGEY CEFSHDWSDQ PNNVCTFYQK GACSYGSRCR YDHVKVSRSP  60
RVLPPPPSSS TARPVASTLQ SLSSNRPPHT GHQNDSNNET QQSYMNMLAH SASEPAWSSD  120
FQQTTVSEDG SNWSSNATVQ NQEPMRPADL PICSFAAAGN CPYGESCLQM HGDLCTTCGK  180
MCLHPYRPDE REEHIKLCEK NHKRLDALKR SQEIECSVCL DRVLSKPTAA ERKFGLLSEC  240
DHPFCIGCIR NWRNNSPTSG MDVNSALRAC PICRKLSYYV IPSVLWYFSK EEKQEIIESY  300
KSKLKSIDCK YFDFGTGSCP FGTSCFYRHA YRDGRLEEVV LRHLDADDGS TVIAKNIRYI  360
LSDFLSRLHL *
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_23513A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965338.10.0E3 ubiquitin-protein ligase makorin
SwissprotQ5ZA070.0C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLK3XXQ20.0K3XXQ2_SETIT; Uncharacterized protein
STRINGSi006712m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53263356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-147C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sahi VP, et al.
    A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
    Plant Signal Behav, 2012. 7(3): p. 375-81
    [PMID:22499205]
  3. Wadekar HB,Sahi VP,Morita EH,Abe S
    MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
    Planta, 2013. 237(4): p. 1083-95
    [PMID:23262670]