PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_16702A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

bHLH

Protein Properties

Length: 265aa MW: 29053.2 Da PI: 4.7146

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_16702A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.5	7.2e-06	215	234	10	29
HHHHHHHHHHHHHHHCTSCC CS HLH 10 rrRRdriNsafeeLrellPk 29 r+RR+riN+++ L++l+P+ Oropetium_20150105_16702A 215 RKRRERINERLRILQTLVPN 234 9******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	9.95E-6	206	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-4	214	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.30E-4	214	238	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MESPYISSTP SMEIDMMAQL LGAHDQCFAY EHVDESMEAM AALFLPCLDT DSNSSSSCLN 60 YDVPLQCWPQ PGHSSRVTSL LDPDQSFESF EFPVMEPFPS ADFESHSAIP YLSEDSSLHV 120 NHSSVREEEA PNDAPATKKR KSSAAMKASK KIKKVGKKDQ IGNNDGINSH VETQSSSSCT 180 SENENLDGNA NSGSTKTCTR ASRGAATDPQ SLYARKRRER INERLRILQT LVPNGTKLLS 240 SDDMWMYAPI AYNGINISDV DLNI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_16702A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004959802.2	1e-130	transcription factor bHLH54
TrEMBL	A0A1E5UZQ7	1e-137	A0A1E5UZQ7_9POAL; Transcription factor bHLH84
STRING	Si032445m	1e-130	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12496	29	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G14760.1	1e-17	bHLH family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_16702A