PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_15625A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

G2-like

Protein Properties

Length: 259aa MW: 28600.7 Da PI: 7.8736

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_15625A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	97.4	1.1e-30	18	71	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+eLH++Fveave LGG+++AtPk+il+lm+vkg++++h+kSHLQ+YR+ Oropetium_20150105_15625A 18 PRMRWTEELHRQFVEAVECLGGQDEATPKRILQLMGVKGVSISHIKSHLQMYRS 71 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.7E-29	14	72	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.392	14	74	IPR017930	Myb domain
TIGRFAMs	TIGR01557	2.1E-24	18	71	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.06E-16	18	73	IPR009057	Homeodomain-like
Pfam	PF00249	6.9E-9	19	70	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MRGFERKGVR QYNRSEVPRM RWTEELHRQF VEAVECLGGQ DEATPKRILQ LMGVKGVSIS 60 HIKSHLQMYR SSSNNSTHQQ AAHPKLTSTA ASNNSKRVFL NREDYCVYAS HDGNTATASD 120 KNIYTMLLNC SHSAPCQIPS LKQVYSNWEQ SSRGRVPSHS DDDVFTVEKV NRPSNNTYCY 180 KKKPDHKQNG CDLTLSIGPW EDASSSDADG SSTISEELAA PRGEGGESFG SRFVAAAVKQ 240 ESAPPLNLDL TISSSWLG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-17	19	72	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-17	19	72	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	3e-17	19	72	3	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-17	19	72	3	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-17	19	72	3	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-17	19	72	3	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-17	19	72	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-17	19	72	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-17	19	72	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-17	19	72	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-17	19	72	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-17	19	72	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_15625A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU406763	2e-77	CU406763.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C005B16, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004966301.1	1e-116	uncharacterized protein LOC101769616
TrEMBL	K3XZ21	1e-114	K3XZ21_SETIT; Uncharacterized protein
STRING	Si007179m	1e-115	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5493	37	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	1e-26	G2-like family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_15625A