PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Oropetium_20150105_15410A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 156aa MW: 17035.4 Da PI: 8.5563 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 68.7 | 1.1e-21 | 56 | 120 | 1 | 65 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkik 65 +W++ e+ a +++r e+++++ ++k++k+lWe+vs++++++gf r+p qCk+kw+nl +r+k Oropetium_20150105_15410A 56 QWSHAETAAFLAIRAELDHSFLTTKRNKALWEAVSARLAAQGFARTPDQCKSKWKNLVTRFKGXX 120 7*************************************************************765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd12203 | 5.48E-25 | 55 | 118 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-4 | 56 | 112 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 6.2E-17 | 56 | 118 | No hit | No description |
PROSITE profile | PS50090 | 7.677 | 57 | 113 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 156 aa Download sequence Send to blast |
MDPFHHLNSS FSNPYHPLLS PSPPHHFPPV LLAAEPPPPP SSLPSASPVD RERLPQWSHA 60 ETAAFLAIRA ELDHSFLTTK RNKALWEAVS ARLAAQGFAR TPDQCKSKWK NLVTRFKGXX 120 XXXXXXXXXQ TAEADSAAAA ASAARQFPFH DDGST* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ebi_A | 3e-14 | 51 | 117 | 1 | 67 | DNA binding protein GT-1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Oropetium_20150105_15410A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK355080 | 2e-76 | AK355080.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1015K12. | |||
GenBank | AK375948 | 2e-76 | AK375948.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3110L24. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025805344.1 | 4e-55 | LOW QUALITY PROTEIN: trihelix transcription factor GT-3b-like | ||||
TrEMBL | J3M3M4 | 3e-53 | J3M3M4_ORYBR; Uncharacterized protein | ||||
STRING | OB05G11980.1 | 5e-54 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12595 | 31 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G01380.1 | 5e-27 | Trihelix family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Oropetium_20150105_15410A |