PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_14971A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

Trihelix

Protein Properties

Length: 278aa MW: 32143.3 Da PI: 7.2038

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_14971A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	62.4	1e-19	2	63	26	86
trihelix 26 lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 +kk++W+++s++m +rg+++sp+qC++k+++lnkryk+++++ +++ +++++ + +++d+++ Oropetium_20150105_14971A 2 QKKGKWKAISNVMGQRGCHVSPQQCEDKFNDLNKRYKRLTDILGRGtACNVVANPALLDSMN 63 89********************************************5599999999999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.6E-15	3	89	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MQKKGKWKAI SNVMGQRGCH VSPQQCEDKF NDLNKRYKRL TDILGRGTAC NVVANPALLD 60 SMNHLSDKMK DDAKKILSSK HLFYEEMCSY HNNNRANLPE DPALQHSLQL ALRCKEDHDS 120 RRDLSGDADE DDQSADSDYY EDDEEHHAVH MNMRVPTVPK RMQHSDMALV NSSPHEGSVR 180 YDSHGITVDI NKVCPDGTNL SSQSLEIQKR RLEIDAKELE LTKQRLKWER FKKKKDRELE 240 RMTLENEHMM IENKRLELEL RQKELQLGLK LKGQGHV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	228	234	ERFKKKK
2	229	235	RFKKKKD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_14971A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002449041.1	1e-158	uncharacterized protein LOC8070669
TrEMBL	A0A1Z5RGS0	1e-158	A0A1Z5RGS0_SORBI; Uncharacterized protein
STRING	Sb05g003890.1	1e-158	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2920	38	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	2e-72	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_14971A