PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_13419A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family SBP
Protein Properties Length: 174aa    MW: 18597.5 Da    PI: 9.5389
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_13419AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1291.8e-4075150277
                                -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                        SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                                Cq+++C +dl+eak+yhrrhkvCe+hs+apvv+v+gl+qrfCqqCsrf +lsefDe++rsCrrrLa+hnerrrk +
  Oropetium_20150105_13419A  75 CQADRCGVDLTEAKRYHRRHKVCETHSRAPVVIVAGLRQRFCQQCSRFQDLSEFDENRRSCRRRLAGHNERRRKGA 150
                                *************************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.6E-3370136IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.55672149IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.09E-3773152IPR004333Transcription factor, SBP-box
PfamPF031109.5E-3275148IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010321Biological Processregulation of vegetative phase change
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MDRSREQRSS RRSTSAAASM AALAAAAAAG EGADSAGEVT HVDEDQSQPT TLAVPVTAAR  60
RGGGAAGGGY GGPSCQADRC GVDLTEAKRY HRRHKVCETH SRAPVVIVAG LRQRFCQQCS  120
RFQDLSEFDE NRRSCRRRLA GHNERRRKGA MDPHPGDQDG RGHPHPGNNL LIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-3666148284squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00634PBMTransfer from PK22320.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_13419A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018850782.12e-47PREDICTED: squamosa promoter-binding-like protein 3
SwissprotQ6Z4615e-40SPL13_ORYSJ; Squamosa promoter-binding-like protein 13
TrEMBLA0A2I4H3R14e-46A0A2I4H3R1_JUGRE; squamosa promoter-binding-like protein 3
STRINGXP_010260271.14e-46(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85243248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.22e-28squamosa promoter binding protein-like 4