PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_13270A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | GRF | ||||||||
Protein Properties | Length: 214aa MW: 22879.7 Da PI: 4.9922 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 73.1 | 3.1e-23 | 131 | 175 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ++epgrCrRtDGKkWRC+r +++++k+CErH+hrgr+r + ++e Oropetium_20150105_13270A 131 EPEPGRCRRTDGKKWRCWRSTIPNEKYCERHMHRGRKRPVQLVVE 175 69************************************9998875 PP | |||||||
2 | QLQ | 54.8 | 3e-19 | 65 | 100 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 aFTa+Qlq+L++Q +y+y+aa++PvP +L+++i+k Oropetium_20150105_13270A 65 AFTAMQLQELEQQSRVYQYMAARVPVPTHLVFPIWK 100 8*********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 4.7E-8 | 64 | 100 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 4.5E-12 | 65 | 99 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 20.922 | 65 | 100 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 22.471 | 131 | 175 | IPR014977 | WRC domain |
Pfam | PF08879 | 7.2E-20 | 132 | 170 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MPNQQGADGG GPAGDKDDAA CRDLVLVEDP EAVAVEDPEE AAATAALQEE MKALVASVPD 60 GAGAAFTAMQ LQELEQQSRV YQYMAARVPV PTHLVFPIWK SVTGASSEGA QKYPTLMGLA 120 TLCLDFGKNP EPEPGRCRRT DGKKWRCWRS TIPNEKYCER HMHRGRKRPV QLVVEDDEPD 180 SASGSKTTPG KADDKSASNK KLTVAAPAAV EST* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of cell proliferation in developing shoots and leaves (PubMed:24854713). Does not possess transactivation activity (PubMed:24854713). {ECO:0000269|PubMed:24854713}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_13270A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025800926.1 | 1e-138 | growth-regulating factor 11-like | ||||
Swissprot | A5HEG9 | 1e-134 | GRF10_MAIZE; GRF-interacting factor 10 | ||||
TrEMBL | A0A2S3H2A3 | 1e-137 | A0A2S3H2A3_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7EVY2 | 1e-137 | A0A2T7EVY2_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3L6QSN3 | 1e-137 | A0A3L6QSN3_PANMI; Growth-regulating factor 11-like | ||||
STRING | Si030809m | 1e-136 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6735 | 31 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 1e-31 | growth-regulating factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_13270A |
Publications ? help Back to Top | |||
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