PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_12273A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | WRKY | ||||||||
Protein Properties | Length: 188aa MW: 20041.4 Da PI: 6.4017 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 52.3 | 1.1e-16 | 129 | 167 | 21 | 59 |
-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 21 prsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 + sYYrCt+++C+vkk+ver +ed ++v++tYeg+H+h+ Oropetium_20150105_12273A 129 SWSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGRHTHT 167 569***********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118290 | 2.35E-12 | 129 | 167 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.5E-11 | 130 | 166 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.1E-15 | 130 | 167 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.9E-8 | 131 | 168 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 15.032 | 131 | 166 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MEGSSQLEAC FPSLYGLSRR PCAAAPPPRH LAPLPNENKL LQMPLVQEQT ENNHGVMLSS 60 YHDNHGDLYP LLLPGIPFCP TSAAACDKPT GFAPPLDAVE AGTSAVKAGG EMAASNITAA 120 ATTCHGSASW SYYRCTHSNC RVKKRVERLS EDCRMVITTY EGRHTHTPCS DDADGTDHTG 180 SCAFTSF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_12273A |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU665432 | 8e-61 | EU665432.1 Triticum aestivum WRKY3 transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020155480.1 | 2e-65 | probable WRKY transcription factor 12 | ||||
TrEMBL | A0A287IZ53 | 1e-65 | A0A287IZ53_HORVV; Uncharacterized protein | ||||
STRING | Traes_2AL_B1270662B.1 | 2e-66 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1138 | 38 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44745.1 | 1e-22 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_12273A |