PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_08838A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MYB_related
Protein Properties Length: 657aa    MW: 74137.6 Da    PI: 8.5628
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_08838AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-07599641343
                                SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
            Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                                +WT+   + lv+a k ++++   +W+++a+ ++ g+t  qck +
  Oropetium_20150105_08838A 599 AWTETQVLALVQALKAFPKDvsqRWERVAAAVP-GKTVVQCKKK 641
                                7********************************.********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465658.11E-2092177IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1101.3E-2095201IPR001623DnaJ domain
SMARTSM002711.2E-1598173IPR001623DnaJ domain
PfamPF002261.2E-1799178IPR001623DnaJ domain
PROSITE profilePS5007618.13699181IPR001623DnaJ domain
CDDcd062575.45E-1399170IPR001623DnaJ domain
PRINTSPR006257.9E-9104122IPR001623DnaJ domain
PRINTSPR006257.9E-9122137IPR001623DnaJ domain
PRINTSPR006257.9E-9153173IPR001623DnaJ domain
PROSITE patternPS006360158177IPR018253DnaJ domain, conserved site
PROSITE profilePS500906.098463518IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.2E-5463510IPR009057Homeodomain-like
SuperFamilySSF466892.84E-7464511IPR009057Homeodomain-like
SMARTSM007171.1E-5467520IPR001005SANT/Myb domain
CDDcd001671.89E-4470510No hitNo description
PfamPF002495.3E-6470510IPR001005SANT/Myb domain
SMARTSM007171.9E-5596648IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-4599646IPR009057Homeodomain-like
CDDcd001675.70E-5599641No hitNo description
PfamPF002495.1E-6599641IPR001005SANT/Myb domain
SuperFamilySSF466894.04E-8599651IPR009057Homeodomain-like
PROSITE profilePS500906.295600646IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MVMESHKSCL LITYSREIID GVPLFVSSNC LPVKALKYEP AGHSFHAAAM KLLGLGEQED  60
TEADDRSVSS DEKSQDFGTG SDTFSSKGKK KSSGSQQQDH YALLGLGNLR YLATEDQIRK  120
SYRDMALKHH PDKQASLLLA ETTEQGKQAK KDEIESHFKA IQEAYEVLID PTKRRIFDST  180
DEFDDDVPTD CAPQDFFKVF GPAFMRNGRW SVNQPIPFLG DDATPIEEVD KFYNFWYNFK  240
SWREFPDDDE YELEQAESRE HRRWMERQNM KLQEKAKKAE YARVRTLVDN AYKKDPRIQR  300
RKEEEKAEKQ RRKEAKYLAK KMQEEEAARA AEEEKKRKEE EAKKAAEAAL NQKKLKEKEK  360
KLLRKEKTRL RTIAAPVIAE NHFGLSEDDI EAACGFLDME RLKQLCDNMD GKDAAEKAIL  420
LKRALNKESC SKEEKKIEAN GVEASTTKSA SGNKVAQASI LNNYEKKERP WGKEEVDLLR  480
KAIQKYPKGT SRRWEVVSEF IGTGRSVEEI LKATKTVLLQ KPDSTKAFDS FLEKRKPAQS  540
IASPLSTRDD TVGPSTEGAG VVSSKVTAQP VSSQTASEKT AAAADPVQNG TSSTTDLDAW  600
TETQVLALVQ ALKAFPKDVS QRWERVAAAV PGKTVVQCKK KVTSMRENFR SKKGAE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A3e-1819529920124Zuotin
5dje_B3e-1819529920124Zuotin
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_08838A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021319127.10.0dnaJ homolog subfamily C member 2-like
RefseqXP_021319128.10.0dnaJ homolog subfamily C member 2-like
RefseqXP_021319129.10.0dnaJ homolog subfamily C member 2-like
RefseqXP_021319130.10.0dnaJ homolog subfamily C member 2-like
TrEMBLA0A1B6PK990.0A0A1B6PK99_SORBI; Uncharacterized protein
STRINGPavir.Ia04593.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81193440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.11e-124DnaJ domain ;Myb-like DNA-binding domain