PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_08246A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family Trihelix
Protein Properties Length: 381aa    MW: 42385.1 Da    PI: 9.4575
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_08246AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.41.6e-1741114267
                   trihelix   2 WtkqevlaLiearremeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikeg 67 
                                Wt  e+++Liearr+++e+ r+ +          +p+W++v +++++ g++rs++qC+++w+nl ++ykk+++ 
  Oropetium_20150105_08246A  41 WTVPETMVLIEARRKVHEEERQPAgdqqqgliVVAPRWRWVEDYCWRAGCRRSQNQCNDRWDNLMRDYKKVRAY 114
                                **************999999874334556666679***********************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.86333105IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.6E-533107IPR009057Homeodomain-like
PfamPF138371.3E-1239114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MGGTGGVVHG EGDGQEATRN DSVAGALTAA LSSREYRRGN WTVPETMVLI EARRKVHEEE  60
RQPAGDQQQG LIVVAPRWRW VEDYCWRAGC RRSQNQCNDR WDNLMRDYKK VRAYELIRXX  120
XXXXXXXXXX XXXXYWAMST AERKEKGLPS NFLREIYDAM TEVVERKTMT SGGGGAFWGA  180
SSSSSFLDVP MQASPLAQVL PPAMPMPQER VVMTRGHGVP LCRSESPERK RRRASLDEQR  240
PPGESSSSMP ASGTQHFHRR EEHVVHRPRR EYDQNSXXXX XXXXXXXXXX SGAIGQCAAI  300
LSEALESQEA AEERRHREVM AVEERRGRAL QARRRTGEQC AAGLAAAVNQ LARSMLTLAA  360
AKQQHKGGGP PPGPGPAAPN *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228232RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_08246A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1357928e-41AC135792.3 Oryza sativa chromosome 3 BAC OSJNBa0056E06 genomic sequence, complete sequence.
GenBankAP0149598e-41AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126118e-41CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792444.11e-123uncharacterized protein LOC112873645
TrEMBLA0A3L6TR531e-124A0A3L6TR53_PANMI; Uncharacterized protein
STRINGPavir.J22454.1.p1e-118(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32943571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.12e-43Trihelix family protein