PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_07373A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | C3H | ||||||||
Protein Properties | Length: 303aa MW: 33613 Da PI: 8.1554 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.8 | 2.9e-06 | 129 | 145 | 9 | 26 |
GGGTS--TTTTT-SS-SS CS zf-CCCH 9 fartGtCkyGdrCkFaHg 26 f++ G Ck+Gd C +aHg Oropetium_20150105_07373A 129 FRK-GGCKRGDACEYAHG 145 455.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 10.615 | 85 | 147 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.258 | 155 | 179 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MMMMGEGMSV PPWSSSSHHH NHQLPVSGVX XXXXXXXXXX APYLLAALQQ YLPSNNDCYA 60 DDDEEAAAMA AAVDAYACDE FRMYDFKVRR CTRARSHDWX XXXXXXXXXX XXXXXXXXXX 120 XXXXXXXXFR KGGCKRGDAC EYAHGVFECW LHPARYRTQP CKDGTACRRR VCFFAHTPDQ 180 MRVLPPQQSS PRGVVASSPL AESYDGSPLR RQAFESYLNK TIMSSSPTST LVSPPKSPPS 240 DSPPLSPDAA DAYRRGSWPG VGSPVNDVLA SLRQLRLNKV NSSPSDIIVE RPLAAGRHVA 300 VT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269|PubMed:16778011}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_07373A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP096141 | 0.0 | FP096141.1 Phyllostachys edulis cDNA clone: bphyem209h03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817903.1 | 1e-113 | zinc finger CCCH domain-containing protein 2-like | ||||
Swissprot | Q9FU27 | 1e-109 | C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2 | ||||
TrEMBL | A0A2T7DS97 | 1e-112 | A0A2T7DS97_9POAL; Uncharacterized protein | ||||
STRING | Si024826m | 1e-110 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1578 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19810.1 | 7e-43 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_07373A |
Publications ? help Back to Top | |||
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