PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_07373A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C3H
Protein Properties Length: 303aa    MW: 33613 Da    PI: 8.1554
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_07373AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.82.9e-06129145926
                                GGGTS--TTTTT-SS-SS CS
                    zf-CCCH   9 fartGtCkyGdrCkFaHg 26 
                                f++ G Ck+Gd C +aHg
  Oropetium_20150105_07373A 129 FRK-GGCKRGDACEYAHG 145
                                455.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.61585147IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.258155179IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MMMMGEGMSV PPWSSSSHHH NHQLPVSGVX XXXXXXXXXX APYLLAALQQ YLPSNNDCYA  60
DDDEEAAAMA AAVDAYACDE FRMYDFKVRR CTRARSHDWX XXXXXXXXXX XXXXXXXXXX  120
XXXXXXXXFR KGGCKRGDAC EYAHGVFECW LHPARYRTQP CKDGTACRRR VCFFAHTPDQ  180
MRVLPPQQSS PRGVVASSPL AESYDGSPLR RQAFESYLNK TIMSSSPTST LVSPPKSPPS  240
DSPPLSPDAA DAYRRGSWPG VGSPVNDVLA SLRQLRLNKV NSSPSDIIVE RPLAAGRHVA  300
VT*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269|PubMed:16778011}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_07373A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0961410.0FP096141.1 Phyllostachys edulis cDNA clone: bphyem209h03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817903.11e-113zinc finger CCCH domain-containing protein 2-like
SwissprotQ9FU271e-109C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A2T7DS971e-112A0A2T7DS97_9POAL; Uncharacterized protein
STRINGSi024826m1e-110(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.17e-43C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Mebel AM,Kislov VV,Hayashi M
    Prediction of product branching ratios in the C(3P)+C2H2-->l-C3H+H/c-C3H+H/C3+H2 reaction using ab initio coupled clusters calculations extrapolated to the complete basis set combined with Rice-Ramsperger-Kassel-Marcus and radiationless transition theories.
    J Chem Phys, 2007. 126(20): p. 204310
    [PMID:17552765]
  3. Miyazawa T,Shibata A,Nakagawa K,Tsuzuki T
    Anti-angiogenic function of tocotrienol.
    Asia Pac J Clin Nutr, 2008. 17 Suppl 1: p. 253-6
    [PMID:18296349]