PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_06070A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family ZF-HD
Protein Properties Length: 383aa    MW: 39284 Da    PI: 8.6049
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_06070AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer105.63e-333388559
                ZF-HD_dimer  5 rYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59
                               +Y+eClkNhAaslGgha+DGCgEfmps+g++ +++++lkCaACgCHRnFHRr+v+ 
  Oropetium_20150105_06070A 33 MYRECLKNHAASLGGHALDGCGEFMPSPGATtADPSSLKCAACGCHRNFHRRTVDG 88
                               7****************************99899******************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047709.0E-283386IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.2783485IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-213484IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015668.7E-313485IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466896.57E-16216283IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-27220284IPR009057Homeodomain-like
TIGRFAMsTIGR015657.7E-23225281IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MEAMDIKYNN KTVVFPNGGA AKKAKPPALG EPMYRECLKN HAASLGGHAL DGCGEFMPSP  60
GATTADPSSL KCAACGCHRN FHRRTVDGST PPPLATAPAP LALPAPPVPA GVLHGQPQPQ  120
PRREETPEDR LPAVVDGDDS DSDSDASEYD EERSVSPPPP LLHHVPAPVA QQPPPPPPYY  180
PSAPHMLLSL GSGAPGAAMA AAAGVAQRLP TPASAPTAPG GAAQRKRFRT KFTAEQKRRM  240
QELSERLGWR LQKRDEAIVD EWCRDIGVGK GVFKVWMHNN KHNFLGGHSA RRSAAAAAAS  300
VVAAGGPATS FQNPAPPAGS APPAFHRSAA SPPPPVLSSS PPGGGATGFI NINGAAANAS  360
AAPTAPAGHH ENTNGSSSPQ SA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A1e-202252831775ZF-HD homeobox family protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224238RKRFRTKFTAEQKRR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_06070A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001145929.21e-127uncharacterized protein LOC100279452
SwissprotQ6ER216e-89ZHD9_ORYSJ; Zinc-finger homeodomain protein 9
TrEMBLB6TFI11e-125B6TFI1_MAIZE; ZF-HD homeobox protein
TrEMBLK0DG721e-125K0DG72_MAIZE; ZHD2 ZF-HD type transcription factor (Fragment)
STRINGGRMZM2G161315_P011e-126(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36463374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.12e-27zinc finger homeodomain 1