PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_04499A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

bHLH

Protein Properties

Length: 387aa MW: 39487.1 Da PI: 5.3871

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_04499A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.3	5.1e-12	205	250	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Oropetium_20150105_04499A 205 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 250 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.17E-13	198	254	No hit	No description
SuperFamily	SSF47459	4.19E-17	198	260	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.39	200	249	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-16	202	259	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.5E-9	205	250	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-13	206	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MQPSGREMQG GGGGQDDFFN QMLSALPTAW SELGSGKSPW DLPAAGVSED PAFDESALLA 60 SRLRHHQIGG GGDKPVMLHL SDLHGLAGDE DGGNAGFLPL PLFTDRTREH MDAAAFKSPN 120 AAGGDEALYN GFGAVGMHGT GAVQTPPFGQ GGPMPAQSFG GDVPSGGGTA LAGAPAAGAS 180 SGGGGAAPPR QQRVRARRGQ ATDPHSIAER LRRERIAERM KALQELVPNA NKTDKASMLD 240 EIIDYVKFLQ LQVKVLSMSR LGGASAVTPL VANMSSEGNG NSNGSENGCS SLRLTEQQVA 300 KLMEEDMGSA MQYLQGKGLC LMPISLASAI SSATSSSLLS RPSIPPMGGA GGPLHDGSSP 360 TSPRLVNGAC GDDSQTIKDA GASDKQ*

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MQPSGREMQG GGGGQDDFFN QMLSALPTAW SELGSGKSPW DLPAAGVSED PAFDESALLA  60
SRLRHHQIGG GGDKPVMLHL SDLHGLAGDE DGGNAGFLPL PLFTDRTREH MDAAAFKSPN  120
AAGGDEALYN GFGAVGMHGT GAVQTPPFGQ GGPMPAQSFG GDVPSGGGTA LAGAPAAGAS  180
SGGGGAAPPR QQRVRARRGQ ATDPHSIAER LRRERIAERM KALQELVPNA NKTDKASMLD  240
EIIDYVKFLQ LQVKVLSMSR LGGASAVTPL VANMSSEGNG NSNGSENGCS SLRLTEQQVA  300
KLMEEDMGSA MQYLQGKGLC LMPISLASAI SSATSSSLLS RPSIPPMGGA GGPLHDGSSP  360
TSPRLVNGAC GDDSQTIKDA GASDKQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	209	214	RLRRER

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_04499A

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK374225	8e-69	AK374225.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3058A22.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001151181.1	1e-171	uncharacterized protein LOC100284814
Swissprot	Q9ZUG9	2e-74	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A1D6HN74	1e-172	A0A1D6HN74_MAIZE; Transcription factor bHLH69
STRING	Pavir.Ab03158.1.p	1e-166	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1419	37	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	5e-42	LJRHL1-like 1

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_04499A

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]