PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_03605A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | G2-like | ||||||||
Protein Properties | Length: 183aa MW: 20582.2 Da PI: 6.0307 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 31.6 | 3.8e-10 | 1 | 20 | 36 | 55 |
G2-like 36 mkvkgLtlehvkSHLQkYRl 55 m+v+g+t++hvkSHLQkYRl Oropetium_20150105_03605A 1 MGVPGITIYHVKSHLQKYRL 20 99*****************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-9 | 1 | 21 | IPR009057 | Homeodomain-like |
Pfam | PF14379 | 3.0E-24 | 53 | 98 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MGVPGITIYH VKSHLQKYRL AKYIPESPAE GFKDEKKDSS DSLSNTDSAP GLQINEALKM 60 QMEVQKRLHE QLEVQRQLQL RIEAQGKYLQ KIIEEQQKLG GSVKASEDQK LPHSPPGLDD 120 YPDSVQPSPK KPRMDELSPN SSRDLTQREF ESHLIGPWDQ EICGKNICGI AFSVEDSKQT 180 QL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_03605A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004961661.1 | 1e-113 | myb family transcription factor PHL7 | ||||
Swissprot | Q9SJW0 | 3e-48 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A2T7EC95 | 1e-112 | A0A2T7EC95_9POAL; Uncharacterized protein | ||||
STRING | Si022972m | 1e-112 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7913 | 33 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.2 | 3e-31 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_03605A |