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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI12G00130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 506aa MW: 55478.6 Da PI: 7.8031 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.1 | 2.7e-31 | 382 | 438 | 3 | 60 |
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 Dgy+WrKYGqK+vkgsefprsYY+Ct+++Cpvk+kve + d+++ ei+Y+geHnh+k ORUFI12G00130.1 382 DGYSWRKYGQKQVKGSEFPRSYYKCTHPTCPVKRKVEMTP-DGRIAEIVYNGEHNHPK 438 9***************************************.***************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54001 | 2.35E-42 | 11 | 227 | No hit | No description |
PROSITE profile | PS50600 | 13.78 | 19 | 183 | IPR003653 | Ulp1 protease family, C-terminal catalytic domain |
Gene3D | G3DSA:3.30.310.130 | 2.9E-6 | 83 | 177 | No hit | No description |
Pfam | PF02902 | 8.3E-6 | 90 | 183 | IPR003653 | Ulp1 protease family, C-terminal catalytic domain |
Gene3D | G3DSA:2.20.25.80 | 1.7E-27 | 374 | 439 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.72 | 375 | 439 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-24 | 377 | 439 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.7E-34 | 380 | 438 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.3E-24 | 382 | 437 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006508 | Biological Process | proteolysis | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0019784 | Molecular Function | NEDD8-specific protease activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 506 aa Download sequence Send to blast |
MAHGGGEEEE ERVLSHGDVV LLRCDLTILR GPHFLNDRII AFYLAHLAAD HHDDDLLLLP 60 PSVPYLLSNL PDPASVAAVA DPLRLASRRL VLLPVNDNPD VSHAEGGSHW TLLVLDNSNA 120 VSGPRFVHHD SLPPTNLPAA RRLAAVLRPL LPASAIPLIE GPTPRQTNGY DCGVFVLAVA 180 RAICNWWPTR ARHSNSDSDW LEAVKREVNA DSVKAMRTQL LQLIHTLIQN NTTTNQHSPS 240 TQLPSHPSIA STSLPVTAQD FGTWCDMQSH KKVAAVKPVA SRPSSRLRSF SMLQEDSTAI 300 DSPRVTSLEE IILRRPKATR FTHPLSNSST EIAATRLEDS GTHTAYDQKK ADTGKGACWD 360 NLTVSQSVRK PNVSAKNSLS YDGYSWRKYG QKQVKGSEFP RSYYKCTHPT CPVKRKVEMT 420 PDGRIAEIVY NGEHNHPKPH PPRKPTLSTS VETLVATNDA GLENKLEGCD QAIGSDAVVE 480 ALRGGCHCLD GFRNGNEISD CKKRSN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2bkq_A | 9e-26 | 13 | 184 | 5 | 175 | SENTRIN-SPECIFIC PROTEASE 8 |
2bkq_B | 9e-26 | 13 | 184 | 5 | 175 | SENTRIN-SPECIFIC PROTEASE 8 |
2bkq_C | 9e-26 | 13 | 184 | 5 | 175 | SENTRIN-SPECIFIC PROTEASE 8 |
2bkq_D | 9e-26 | 13 | 184 | 5 | 175 | SENTRIN-SPECIFIC PROTEASE 8 |
2bkr_A | 9e-26 | 13 | 184 | 5 | 175 | SENTRIN-SPECIFIC PROTEASE 8 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY341860 | 0.0 | AY341860.1 Oryza sativa (japonica cultivar-group) WRKY20 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015698188.1 | 0.0 | PREDICTED: uncharacterized protein LOC102718700 | ||||
TrEMBL | A0A0E0RCI2 | 0.0 | A0A0E0RCI2_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI12G00130.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2325 | 29 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37260.1 | 5e-29 | WRKY family protein |