PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI11G15600.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GRAS

Protein Properties

Length: 741aa MW: 78071 Da PI: 6.5674

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI11G15600.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	370.2	2.8e-113	453	740	78	374
GRAS 78 laalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAee 171 l++++++++++P++kf+h+taNqaI ea++ge+rvH++D+di qG QWpa+lqaLa+Rp+gpp+lR+Tgvg+ +++etg+ La++A++ ORUFI11G15600.1 453 LKVYQILYQACPYIKFAHFTANQAIFEAFHGEDRVHVVDLDILQGYQWPAFLQALAARPGGPPTLRLTGVGH----PPAAVRETGRHLASLAAS 542 6899******************************************************************....99************ PP GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265 l+vpfef++ +a+rle l++ +L+ + gEalaVn v +lhr++ +s+ + +L+++++ Pk++++veqea hn++ Fl rfleal+yys ORUFI11G15600.1 543 LRVPFEFHAAAADRLERLRPAALHRRVGEALAVNAVNRLHRVP------SSHLPPLLSMIRDQAPKIITLVEQEAAHNGPYFLGRFLEALHYYS 630 *****9999*************************9......445566*********************************** PP GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgsl 358 a+fdsl+a++p+es +r+kvE+ ll++ei+nvvacegaer++rhe+le+Wr+ +e GF++vpls a+ q + ll ++ +dgyr+ e+sg+l ORUFI11G15600.1 631 AIFDSLDATFPAESTARMKVEQCLLAPEIRNVVACEGAERVARHERLERWRRLMEGRGFEAVPLSAAAVGQSQVLLGLYGaGDGYRLTEDSGCL 724 ****************************************************************************************** PP GRAS 359 vlgWkdrpLvsvSaWr 374 +lgW+dr+++++SaWr ORUFI11G15600.1 725 LLGWQDRAIIAASAWR 740 *************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	54.535	364	719	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.8E-111	453	740	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 741 aa Download sequence Send to blast
MGTTTMLNAA DMAGGGAKLQ QQQAPTSPTA SVSESNIVAS TASADPEAND ALAGLQALRF 60 DGGGDIDDVE IQSPDIALWE SIFADQIGVS GAGADFLLSM SSAAASPRRD FMACSPKRDY 120 MVTTSSPKRD YMVTSSPKRD YMVSSPKREY MVTSPRREMA TSPRRATFSN LYTSSHGGGG 180 GGGHHLHHQS YVHGGGMEGG GGGHGAQPQY GGLAGHGKGK AQSPLHKVYI NNVGGGSGGG 240 GVKSNTPSTL SCASSYVVHG GESGLPSLPS MDPFLEEGYL GSYQLPEKAA GGVGGGGGGD 300 INRSGASVSV VTAPASSQLL PTLSECLAMP EPAAYRGGGD EAVAAAMAVA GELPVGAFVQ 360 PEMYYGGGGE FGGEGMTPPL QHQMAADSSL HSMLGSVIQS EAEQEQDSGL QLVHLLLACA 420 DLVSKGDHPA ALRHLHLLRR VASPLGDSMQ RTLKVYQILY QACPYIKFAH FTANQAIFEA 480 FHGEDRVHVV DLDILQGYQW PAFLQALAAR PGGPPTLRLT GVGHPPAAVR ETGRHLASLA 540 ASLRVPFEFH AAAADRLERL RPAALHRRVG EALAVNAVNR LHRVPSSHLP PLLSMIRDQA 600 PKIITLVEQE AAHNGPYFLG RFLEALHYYS AIFDSLDATF PAESTARMKV EQCLLAPEIR 660 NVVACEGAER VARHERLERW RRLMEGRGFE AVPLSAAAVG QSQVLLGLYG AGDGYRLTED 720 SGCLLLGWQD RAIIAASAWR C

Sequence ? help Back to Top

Protein Sequence Length: 741 aa Download sequence Send to blast

MGTTTMLNAA DMAGGGAKLQ QQQAPTSPTA SVSESNIVAS TASADPEAND ALAGLQALRF  60
DGGGDIDDVE IQSPDIALWE SIFADQIGVS GAGADFLLSM SSAAASPRRD FMACSPKRDY  120
MVTTSSPKRD YMVTSSPKRD YMVSSPKREY MVTSPRREMA TSPRRATFSN LYTSSHGGGG  180
GGGHHLHHQS YVHGGGMEGG GGGHGAQPQY GGLAGHGKGK AQSPLHKVYI NNVGGGSGGG  240
GVKSNTPSTL SCASSYVVHG GESGLPSLPS MDPFLEEGYL GSYQLPEKAA GGVGGGGGGD  300
INRSGASVSV VTAPASSQLL PTLSECLAMP EPAAYRGGGD EAVAAAMAVA GELPVGAFVQ  360
PEMYYGGGGE FGGEGMTPPL QHQMAADSSL HSMLGSVIQS EAEQEQDSGL QLVHLLLACA  420
DLVSKGDHPA ALRHLHLLRR VASPLGDSMQ RTLKVYQILY QACPYIKFAH FTANQAIFEA  480
FHGEDRVHVV DLDILQGYQW PAFLQALAAR PGGPPTLRLT GVGHPPAAVR ETGRHLASLA  540
ASLRVPFEFH AAAADRLERL RPAALHRRVG EALAVNAVNR LHRVPSSHLP PLLSMIRDQA  600
PKIITLVEQE AAHNGPYFLG RFLEALHYYS AIFDSLDATF PAESTARMKV EQCLLAPEIR  660
NVVACEGAER VARHERLERW RRLMEGRGFE AVPLSAAAVG QSQVLLGLYG AGDGYRLTED  720
SGCLLLGWQD RAIIAASAWR C

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	6e-74	451	739	94	378	Protein SCARECROW
5b3h_A	5e-74	451	739	93	377	Protein SCARECROW
5b3h_D	5e-74	451	739	93	377	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC136377	0.0	AC136377.4 Oryza sativa Japonica Group chromosome 11 clone OSJNBa0028G07, complete sequence.
GenBank	AC137759	0.0	AC137759.4 Oryza sativa Japonica Group chromosome 11 clone OSJNBb0008H02, complete sequence.
GenBank	AP014967	0.0	AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616711.1	0.0	DELLA protein RHT-1
TrEMBL	A0A0E0R8T9	0.0	A0A0E0R8T9_ORYRU; Uncharacterized protein
STRING	ORUFI11G15600.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9221	31	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	1e-91	RGA-like 1