PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI10G07640.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 374aa    MW: 41785.4 Da    PI: 4.7795
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI10G07640.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM36.61.3e-117513269128
              NAM  69 atgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++g+++  + k+gyWk  g+ +  +  ++  vg+k +L  y+g+ap+g++t Wvm+ey +
  ORUFI10G07640.1  75 KNGENAIIKSKTGYWKVVGTVRIPT--STVIVGMKVSLDHYEGEAPSGKRTGWVMDEYLI 132
                      345555557889*******966554..5899***************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100517.4924153IPR003441NAC domain
SuperFamilySSF1019415.36E-2131153IPR003441NAC domain
PfamPF023657.6E-633130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MSAKIGSIFS RTIMSSKVPG LALLNTSISK FWSDEELVRF LAERKEAHSL PENVFVGMNI  60
SLIDPRNSDD PQSPKNGENA IIKSKTGYWK VVGTVRIPTS TVIVGMKVSL DHYEGEAPSG  120
KRTGWVMDEY LIEQNDEANL PQDYKNLCTI FFQGDDILNA GDKQICLNAN VPNERKEFYL  180
QYLAELEEQN AAWSNQAVSV NEQDVSSSKG LDGQKTSAAD DQSVNHAPSR EGYIELNDFL  240
NSDSSASTSE YSSQRTMISE EYFDSDAFLR EIRNDHNAAD EEHTDSKFSV AAASKSDCVV  300
ISPPEQGFVN NLDNHATIAG DSPQKSVKND KVDEHSRSMT LRHAILIRTG RLNRFMPDLL  360
IEHSQRRLQV LKQQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0726820.0AK072682.1 Oryza sativa Japonica Group cDNA clone:J023135B15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614544.10.0protein ATAF2 isoform X1
TrEMBLA0A0E0QY280.0A0A0E0QY28_ORYRU; Uncharacterized protein
STRINGORUFI10G07640.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109162632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-12NAC domain containing protein 2