PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI05G12690.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 428aa MW: 43963.6 Da PI: 7.3847 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 83.9 | 1.5e-26 | 228 | 287 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 dDgy+WrKYGqK++ gs++prsYYrCt++ gC++kkkv+r ++dp + e+tY g+H++ ORUFI05G12690.1 228 DDGYTWRKYGQKDILGSRYPRSYYRCTHKnyyGCEAKKKVQRLDDDPFTYEVTYCGNHTC 287 8***************************99999*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.4E-27 | 219 | 287 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.551 | 222 | 285 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.14E-24 | 224 | 287 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.1E-37 | 227 | 289 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.3E-25 | 228 | 287 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 428 aa Download sequence Send to blast |
MHVFAPHQVT PLSVLLAATA GGGFDRRDRS RVVGGGGGGR EGGEMDEVLA QISEGFRLAG 60 ELMSELAATQ NDPDYLAARC HAIAGAYAAA ARVLQGARHG GGGVGAASTS FGGEGYLHHQ 120 HRQQLDLLRM CVGGTAPDEA AAAANPFLGG GGGATTAAFR APSDAYGGAG AGTSGGPVRR 180 VSSSSRSPPS PVQPRQGGAG SRRRRESGEK VTVMVAAQRT GNTEQPPDDG YTWRKYGQKD 240 ILGSRYPRSY YRCTHKNYYG CEAKKKVQRL DDDPFTYEVT YCGNHTCLTS TTPLLTLPAA 300 AATSVTNSPT AAAVLGQDFV MAPAADQQPP QHQQAQPPLS TSIHLGIGWP MTPASLAGAV 360 GEGSTSTTAT APQVTTMGAT AAGGGGAAAR DADHYPVADL ADVMFNSGGS GSSSIMDGIF 420 SSHDRRDN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 1e-21 | 228 | 287 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00304 | DAP | Transfer from AT2G40740 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK287817 | 0.0 | AK287817.1 Oryza sativa Japonica Group cDNA, clone: J065181J09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638743.1 | 0.0 | WRKY transcription factor 55 | ||||
TrEMBL | A0A0E0PKS0 | 0.0 | A0A0E0PKS0_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI05G12690.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9796 | 33 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40740.1 | 2e-37 | WRKY DNA-binding protein 55 |