PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI03G28690.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NF-YA | ||||||||
Protein Properties | Length: 334aa MW: 35042 Da PI: 9.3642 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 96.1 | 3.8e-30 | 150 | 206 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d+p+YVNaKQy++Il+RR +Rak+++e++l k+rkpylheSRh+hA+rR+RgsgGrF ORUFI03G28690.1 150 DAPIYVNAKQYEGILRRRRARAKAQRENRL-VKGRKPYLHESRHRHAMRRARGSGGRF 206 68****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 6.8E-33 | 148 | 209 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.01 | 149 | 209 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.4E-23 | 152 | 174 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.5E-27 | 152 | 206 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.4E-23 | 183 | 206 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MLSFKQSHEG FGHVAAAGAG PQQQQQPWWA GSQLLYGEAS PEEAALRDGG QFQVVPGGRA 60 ALDPAAPEPE KTAVPAMPKR GGGGGAPEVL TFSVFSGNLE PGDTGEKNRE HSATIAMQSP 120 LPEYNGHFEL GLGQSMSGGR MLLPLNAPAD APIYVNAKQY EGILRRRRAR AKAQRENRLV 180 KGRKPYLHES RHRHAMRRAR GSGGRFLNTK KEATAAGCGG SSKTPLASLV SPADVAHRPG 240 SRGGGGRASS LSGSDVSSPG GGMYDHHRHD DADAADHYNS IDHHLRTPFF TPLPIIMDSG 300 GGGGDHASHS TAAVAAPFRW ATAAGDGCCE LLKA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_A | 7e-18 | 150 | 208 | 2 | 61 | HAPB protein |
4g92_A | 7e-18 | 150 | 208 | 2 | 61 | HAPB protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 190 | 199 | RHRHAMRRAR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB288034 | 0.0 | AB288034.1 Oryza sativa Japonica Group OsHAP2H mRNA for HAP2 subunit of HAP complex, complete cds. | |||
GenBank | AK106398 | 0.0 | AK106398.1 Oryza sativa Japonica Group cDNA clone:002-102-F12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628114.1 | 0.0 | nuclear transcription factor Y subunit A-10 isoform X2 | ||||
TrEMBL | A0A0E0NYV9 | 0.0 | A0A0E0NYV9_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI03G28690.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2307 | 37 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14020.1 | 2e-22 | nuclear factor Y, subunit A6 |