PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI02G35630.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 317aa    MW: 34662.9 Da    PI: 4.4441
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI02G35630.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57349.21.4e-15135226298
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk.vsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 
                      +f+r+ws eDe+ +L +l   + ++g  +   +da++ ++ +s++ + + +++l  K+  LK++++   kk  +g+    sk hd+  ++lsk+
  ORUFI02G35630.1 135 AFHRIWSTEDEVRILEALAAHRREHG--SLPQTDALIATLAGSLDNTgYGRKELQGKVSTLKRRYESTAKK--KGDL--PSKGHDRRLYDLSKS 222
                      699******************99999..678899**********8653899******************99..5554..5799*********** PP

           DUF573  95 iWgs 98 
                      +Wgs
  ORUFI02G35630.1 223 VWGS 226
                      **95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.1E-21136225IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MAPKRPTPPP PPPPVASSEE TASGSDSDES EEEEEEESPL AQPAPVVSNK GAESDSSGEE  60
ESEEEEEEDL VRSSATKSRD PPQENREEDD SSDEEEDESS ESEKAEEPPP PPLNPAPKQG  120
AEGNGPKVSS PKRQAFHRIW STEDEVRILE ALAAHRREHG SLPQTDALIA TLAGSLDNTG  180
YGRKELQGKV STLKRRYEST AKKKGDLPSK GHDRRLYDLS KSVWGSEAAA AAANGTTTAP  240
REFGEMCELY PHLAEEVKLL EAAHPGLFKR DFGKLDDDKA HALDMKIKKQ RIAEISVVLR  300
RGDLTKEVTK VLTELVE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627254.11e-142probable tyrosine-protein phosphatase DSP2
TrEMBLA0A0E0NLH60.0A0A0E0NLH6_ORYRU; Uncharacterized protein
STRINGORUFI02G35630.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67292737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66420.15e-09DNA-binding storekeeper protein-related transcriptional regulator