PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI02G26760.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 473aa    MW: 50646.5 Da    PI: 8.2251
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI02G26760.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.9e-19225275256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  ORUFI02G26760.1 225 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 275
                      59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.11E-32224284No hitNo description
SuperFamilySSF541715.17E-23225283IPR016177DNA-binding domain
PROSITE profilePS5103222.998225282IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-32225283IPR001471AP2/ERF domain
SMARTSM003805.9E-39225288IPR001471AP2/ERF domain
PfamPF008472.8E-12226275IPR001471AP2/ERF domain
PRINTSPR003678.7E-11226237IPR001471AP2/ERF domain
PRINTSPR003678.7E-11248264IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MDAVDRGGGG GGGGARGHGR RWKGKGVSAA ISSSAAETQQ PVPVLEDAPA AAALLRPQKK  60
IRSPDRRLQR SISSLSSAPA SPDSSSVSNP MSPPAMSLPN QPPSSRHIFP FAYDPSPGAA  120
APRLLPLLQY SSLYPQPLLP QQQSPLQNQQ MISFGSSQQQ QQQQPQFGAA SPLFPPQFLP  180
PEEQQRLLLR YWSEALNLSP RGVRGGALPP SLYQHLLRAP GPPKLYRGVR QRHWGKWVAE  240
IRLPRNRTRL WLGTFDTAED AAMAYDREAF KLRGENARLN FPDLFLGKGR TGGSGRTSAS  300
AAASCSSSSS SAPPTPDESH TQQAQPQPQQ PTEESSNTEP KPLLFVAEQD GIPEPELNPQ  360
LQTAEQHGSD GNTAMFQPSV TSGGIWGPAD EAWFSAWGPG SSVWDYDMDS AHGLLLQSRL  420
AGEQTGMDYA YTAPEVLVAP VPAAGTAMAT AASSSLPPRP PPPCHSPTFA WKD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-20224282463ATERF1
3gcc_A9e-20224282463ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00458DAPTransfer from AT4G28140Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2429860.0AK242986.1 Oryza sativa Japonica Group cDNA, clone: J090094O16, full insert sequence.
GenBankAP0047680.0AP004768.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0010C01.
GenBankAP0055130.0AP005513.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0014E22.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627619.10.0ethylene-responsive transcription factor ERF054
TrEMBLA0A0E0NI930.0A0A0E0NI93_ORYRU; Uncharacterized protein
STRINGORUFI02G26760.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36913268
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.12e-36ERF family protein