PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA09G0180300.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ZF-HD
Protein Properties Length: 344aa    MW: 35704 Da    PI: 7.9201
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA09G0180300.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer105.14.3e-333994458
        ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58
                       ++Y+eClkNhAaslGgha+DGCgEfmps+ ++ +++++l+CaACgCHRnFHRr +e
  ORGLA09G0180300.1 39 TVYRECLKNHAASLGGHALDGCGEFMPSPAANpADPTSLRCAACGCHRNFHRRLPE 94
                       78*****************************99********************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047709.9E-283992IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257747.0E-244191IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.7524192IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.3E-304191IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.17E-16200266IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-28200267IPR009057Homeodomain-like
TIGRFAMsTIGR015653.6E-23208264IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MEAMDVKYKP LVFPNGAIKK AAKPAAVAPA VGGGGGGETV YRECLKNHAA SLGGHALDGC  60
GEFMPSPAAN PADPTSLRCA ACGCHRNFHR RLPEGSPPPP PPLAPPALLP APPMPPHRGE  120
ETPEVRLPGV DGDESDSDSD GSEYDDERSV SPPPPPLAAA VAHQAYYPSA PHMLLSLGSS  180
GQAQRLPPQV MSPAAAAAPP PGGGGMPRKR FRTKFTAEQK QRMQELSERL GWRLQKRDEA  240
IVDEWCRDIG VGKGVFKVWM HNNKHNYLGG HSARRSASSS SAAAAAAPPF NPPTNHTSPP  300
PPPPPPHATD FNINGTATAA TAAAAATVAA GNHQENGASS PQSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A5e-212082661775ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA09G0180300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056360.0AP005636.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0707C02.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610599.11e-141zinc-finger homeodomain protein 9
SwissprotQ6ER211e-142ZHD9_ORYSJ; Zinc-finger homeodomain protein 9
TrEMBLI1QRX40.0I1QRX4_ORYGL; Uncharacterized protein
STRINGORGLA09G0074600.10.0(Oryza glaberrima)
STRINGORGLA09G0180300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36463374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.12e-27zinc finger homeodomain 1