PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA09G0055000.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 365aa MW: 37854.8 Da PI: 5.2887

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA09G0055000.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	117.4	8.3e-37	75	174	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 aCaaCk++rrkC++dC+la+yfpa+++++f n+h+lFG+s+++k+l+++p+e + dam++l++eA+ara+dPv Ga++v+ +l +q+e l+a ORGLA09G0055000.1 75 ACAACKYQRRKCNADCPLARYFPADEQRRFLNAHHLFGVSKIQKTLRDTPPELHADAMQALTFEANARASDPVGGAARVVVELCRQYEMLHA 166 7***************************************************************************************** PP DUF260 93 elallkee 100 ela+++++ ORGLA09G0055000.1 167 ELAAVQHH 174 ***997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.79	74	175	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-33	75	172	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MTASSSTTNS SSSVSTADTS SSNPPPQHAL HRQHIASSSA SSGGGGAAAP LPPRAPPRVG 60 VGGGGGGGGV GQSQACAACK YQRRKCNADC PLARYFPADE QRRFLNAHHL FGVSKIQKTL 120 RDTPPELHAD AMQALTFEAN ARASDPVGGA ARVVVELCRQ YEMLHAELAA VQHHLKLCRQ 180 QHAAAAAAAA NDPLVANVDP LADTAAEMLF AGAVVPNQND DAMVDAFYAD QQTAGDGDQE 240 QYLVKDEALA AQPPPQQPYE YLNYGTAGDE GSSHAWYTGN GGDADASPPM GLSDQLQQCQ 300 IGAAPPFDVK PELPATMEHG GSVFVEQPEQ KILPAAGSSS SAAAHCQLEL GCSSNAWKVG 360 THVIN

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MTASSSTTNS SSSVSTADTS SSNPPPQHAL HRQHIASSSA SSGGGGAAAP LPPRAPPRVG  60
VGGGGGGGGV GQSQACAACK YQRRKCNADC PLARYFPADE QRRFLNAHHL FGVSKIQKTL  120
RDTPPELHAD AMQALTFEAN ARASDPVGGA ARVVVELCRQ YEMLHAELAA VQHHLKLCRQ  180
QHAAAAAAAA NDPLVANVDP LADTAAEMLF AGAVVPNQND DAMVDAFYAD QQTAGDGDQE  240
QYLVKDEALA AQPPPQQPYE YLNYGTAGDE GSSHAWYTGN GGDADASPPM GLSDQLQQCQ  300
IGAAPPFDVK PELPATMEHG GSVFVEQPEQ KILPAAGSSS SAAAHCQLEL GCSSNAWKVG  360
THVIN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-20	71	175	7	111	LOB family transfactor Ramosa2.1
5ly0_B	1e-20	71	175	7	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA09G0055000.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012617	0.0	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015611163.2	0.0	protein IAL1
TrEMBL	I1QNC1	0.0	I1QNC1_ORYGL; Uncharacterized protein
STRING	ORGLA09G0055000.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18293	10	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72980.1	2e-29	LOB domain-containing protein 7