PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA08G0142100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 420aa    MW: 45672 Da    PI: 5.3283
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA08G0142100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.96.7e-1556115256
                AP2   2 gykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkklege 56 
                         ++GV++++++gr++A+++d  ++n    k+ ++++lg ++ +e Aa+a++ a++k++g+
  ORGLA08G0142100.1  56 AFRGVTRHRWTGRFEAHLWDkNTWNEsqsKKgRQVYLGAYDGEEAAARAYDLAALKYWGH 115
                        58******************777777777557*************************997 PP
2AP248.13e-15157208155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV +++ +g+W+A+I   +   g +k+ +lg++ t eeAa a++ a+ + +g
  ORGLA08G0142100.1 157 SKYRGVARHHHNGKWEARIGRvF---G-NKYLYLGTYATQEEAAVAYDIAAIEHRG 208
                        89****99**********99966...3.6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.77E-1655124IPR016177DNA-binding domain
PROSITE profilePS5103220.03356122IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-1556123IPR001471AP2/ERF domain
SMARTSM003801.5E-2656128IPR001471AP2/ERF domain
PRINTSPR003676.4E-55768IPR001471AP2/ERF domain
PfamPF008472.7E-1257115IPR001471AP2/ERF domain
PRINTSPR003676.4E-5104124IPR001471AP2/ERF domain
CDDcd000181.19E-22157218No hitNo description
SuperFamilySSF541712.62E-17157218IPR016177DNA-binding domain
PfamPF008476.8E-10157207IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-17158216IPR001471AP2/ERF domain
PROSITE profilePS5103217.728158216IPR001471AP2/ERF domain
SMARTSM003803.8E-25158222IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MAKRRSNGET AAASSDDSSS GVCGGGGGGG EVEPRRRQKR PRRSAPRDCP SQRSSAFRGV  60
TRHRWTGRFE AHLWDKNTWN ESQSKKGRQV YLGAYDGEEA AARAYDLAAL KYWGHDTVLN  120
FPLSTYDEEL KEMEGQSREE YIGSLRRKSS GFSRGVSKYR GVARHHHNGK WEARIGRVFG  180
NKYLYLGTYA TQEEAAVAYD IAAIEHRGLN AVTNFDINLY IRWYHGSCRS SSAAAATTIE  240
DDDFAEAIAA ALQGVDEQPS SSPATTRQLQ NADDDDDDLV AQLPPQLRPL ARAASTSPIG  300
LLLRSPKFKE IIEQAAAAAA SSSGSSSSSS TDSPSSSSSS SLSPSPLPSP PPQQQPTVPK  360
DDQYNVDMSS VAAARCSFPD DVQTYFGLDD DGFGYPEVDT FLFGDLGAYA APMFQFELDV
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA08G0142100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1067690.0AK106769.1 Oryza sativa Japonica Group cDNA clone:002-115-F07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651011.10.0AP2-like ethylene-responsive transcription factor At1g79700
TrEMBLI1QJ200.0I1QJ20_ORYGL; Uncharacterized protein
STRINGORGLA08G0142100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.25e-94AP2 family protein