PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0212400.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 187aa    MW: 19928.8 Da    PI: 8.0487
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0212400.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2378.2e-121665255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       +y+GVr ++ +gr++AeIrdp    k++ ++l      e Aa+a++ a+++l+g
  ORGLA06G0212400.1 16 RYRGVRKRP-SGRYAAEIRDPA---KKTPIWLXXXXXXEVAARAYDDAARSLRG 65
                       59*******.7*********83...36*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.4E-241679IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-151674IPR016177DNA-binding domain
PROSITE profilePS5103218.0571673IPR001471AP2/ERF domain
CDDcd000183.02E-121672No hitNo description
Gene3DG3DSA:3.30.730.108.5E-231674IPR001471AP2/ERF domain
PfamPF008471.6E-51665IPR001471AP2/ERF domain
PRINTSPR003671.9E-91728IPR001471AP2/ERF domain
PRINTSPR003671.9E-95575IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MRKSKQPQPQ PSPEIRYRGV RKRPSGRYAA EIRDPAKKTP IWLXXXXXXE VAARAYDDAA  60
RSLRGPTART NFPLAAPSAP PPRPPAAAAA AATSSHSSTV ESWSGGAPRA AASALARSAA  120
PMEATQEEDC HSYCGSSSSV LCEDGSDDAA ASRTPLPFDL NMPPPEELDM AAVADQMGIR  180
YDTLLRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1316731472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA06G0212400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039350.0AP003935.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0661G04.
GenBankAP0054570.0AP005457.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0532H03.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641022.17e-89ethylene-responsive transcription factor 3
TrEMBLI1Q4R11e-124I1Q4R1_ORYGL; Uncharacterized protein
STRINGORGLA06G0212400.11e-124(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61022347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.16e-22ethylene responsive element binding factor 4