PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA05G0099300.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 269aa    MW: 28025.9 Da    PI: 8.3008
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA05G0099300.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY857.1e-2769128258
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                        dDgy+WrKYGqK++ gs++prsYYrCt++   gC++kkkv+r ++dp + e+tY g+H++
  ORGLA05G0099300.1  69 DDGYTWRKYGQKDILGSRYPRSYYRCTHKnyyGCEAKKKVQRLDDDPFTYEVTYCGNHTC 128
                        8***************************99999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-2760128IPR003657WRKY domain
PROSITE profilePS5081121.55163126IPR003657WRKY domain
SuperFamilySSF1182901.44E-2465128IPR003657WRKY domain
SMARTSM007748.1E-3768130IPR003657WRKY domain
PfamPF031064.5E-2569128IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
PSDAYGGAGA GTSGGPVRRV SSSSRSPPSP SPVQPRQGGA GSRRRRESGE KVTVMVAAQR  60
TGNTEQPPDD GYTWRKYGQK DILGSRYPRS YYRCTHKNYY GCEAKKKVQR LDDDPFTYEV  120
TYCGNHTCLT STTPLLTLPA AAATSVTNSP TAAAVLGQDL VMAPAADQQP PQHQQAQPPL  180
STSIHLGIGW PMTPASLAGA VGEGSTSTTA TAPQVTTMGA TAAGGGGAAA RDADHYPVAD  240
LADVMFNSGG SGSSSIMDGI FSYHDRRDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-2069128968OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA05G0099300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2878170.0AK287817.1 Oryza sativa Japonica Group cDNA, clone: J065181J09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638743.11e-130WRKY transcription factor 55
TrEMBLI1PUE50.0I1PUE5_ORYGL; Uncharacterized protein
STRINGORGLA05G0099300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97963344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.11e-38WRKY DNA-binding protein 55