PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA04G0270600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 288aa MW: 32221.1 Da PI: 6.37 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 150.8 | 6.4e-47 | 9 | 143 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek..ewyfFskrdkkya....tgkrknratksgyWkatg 87 +pGfrFhPt+eelv +yL++kv g++ + +i+evd++++ePwdL + ++++++ +yfFs +d+ky+ tg+r+nrat++g+Wkatg ORGLA04G0270600.1 9 APGFRFHPTEEELVGYYLARKVVGQPDDG--IIQEVDLNSIEPWDLLQ-AQQHDEeyYCYFFSYKDRKYPsargTGTRTNRATAAGFWKATG 97 79************************766..8**************74.4444441356**********98888899*************** PP NAM 88 kdkevlsk..kgel.....vglkktLvfykgrapkgektdWvmheyrl 128 +dk+vls+ + +g++ktLvfy+grap+g ktdW++heyrl ORGLA04G0270600.1 98 RDKPVLSSsrS--SsspavIGMRKTLVFYRGRAPNGCKTDWIIHEYRL 143 *******8551..245556***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.11E-50 | 5 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.177 | 8 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.8E-25 | 10 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045491 | Biological Process | xylan metabolic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0090059 | Biological Process | protoxylem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MEEEWCCVAP GFRFHPTEEE LVGYYLARKV VGQPDDGIIQ EVDLNSIEPW DLLQAQQHDE 60 EYYCYFFSYK DRKYPSARGT GTRTNRATAA GFWKATGRDK PVLSSSRSSS SPAVIGMRKT 120 LVFYRGRAPN GCKTDWIIHE YRLVAHHQQP DGSCWVVCRA FHKPTTTTLQ HQLHLHRPPP 180 LLHHHGYYDD QYLYPPPAAA GGGGLLCSPA LDMELEDEED ESKMMILSND NIPLVVSPTA 240 VHTQGTGGDI INDATTAPAA AAADHRRHPE LLAAGPIDTL LHHHHFTC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-38 | 8 | 163 | 15 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA04G0270600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL732342 | 0.0 | AL732342.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: B0518A01, complete sequence. | |||
GenBank | CP012612 | 0.0 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635310.1 | 1e-161 | NAC domain-containing protein 105 | ||||
Swissprot | Q9FH59 | 2e-59 | NC105_ARATH; NAC domain-containing protein 105 | ||||
TrEMBL | I1PR87 | 0.0 | I1PR87_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA04G0270600.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP19027 | 9 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36160.1 | 2e-48 | NAC domain containing protein 76 |
Publications ? help Back to Top | |||
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